View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_high_4 (Length: 495)
Name: NF20193_high_4
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 35501255 - 35500793
Alignment:
| Q |
19 |
gcaattggggagaagttgatttaaatggtcagtgatgtttacatgaattgactaatgtgttgaaatggatatctttcctcttgatgctttgcgtctttct |
118 |
Q |
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| T |
35501255 |
gcaattggggagaagttgatttaaatggtcagtgatgtttacatgaactgactaatgtgttgaaatggatatctttcctcttgatgctttgcgtctttct |
35501156 |
T |
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| Q |
119 |
cagacatctctctttgtcatcattacttgttatactatgagaaaatttgttttgagagnnnnnnnntatatttcacactgtgttctgtataacacgtaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35501155 |
cagacatctctctttgtcatcattacttgttatactatgagaaaatttgttttgagagaaaaaaaaaatatttcacactgtgttctgtataacacgtaaa |
35501056 |
T |
|
| Q |
219 |
catcacaagaacatggtatgctgatattttcagcaaggggtagcactctactaagatattcagttgataccattcatcttatacttaagattgtggtttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501055 |
catcacaagaacatggtatgctgatattttcagcaaggggtagcactctactaagatattcagttgataccattcatcttatacttaagattgtggtttt |
35500956 |
T |
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| Q |
319 |
tcttggggttggggtagaggtggggtttgcttggcttctcaaaaaggaccttcctctcattcttgtttgtgttgccacttgccagccacatgccgtcttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35500955 |
tcttggggttggggtagaggtggggtttgcttggcttctcaaaaaggaccttcctctcattcttgtttgtgttgccacttgccagccacatgccgtcttt |
35500856 |
T |
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| Q |
419 |
ctcttcataccagagagagcttgtttaatagaannnnnnnactacttttataaagttctaata |
481 |
Q |
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| T |
35500855 |
ctcttcatagcagagagagcttgtttaatagaatttttttactacttttatgaagttctaata |
35500793 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 7070212 - 7070258
Alignment:
| Q |
19 |
gcaattggggagaagttgatttaaatggtcagtgatgtttacatgaa |
65 |
Q |
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|||||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
7070212 |
gcaattggggagaagttgatctaaatggttggtgatctttacatgaa |
7070258 |
T |
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