View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_high_6 (Length: 408)
Name: NF20193_high_6
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 391
Target Start/End: Original strand, 4155151 - 4155538
Alignment:
| Q |
4 |
tattaagtgttaacattgatttttggttttgacagagaactactaaaaggatggagcaattcgtcaatgaaacatctatcataatcaaggttaataagga |
103 |
Q |
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| T |
4155151 |
tattaagtgttaacattgatttttggttttgacagagaactactaaaaggatggagcaattcgtgaatgaaacatatatcataatcaaggttaataagga |
4155250 |
T |
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| Q |
104 |
cataactggaaatactcctgcaaattcatccgtcttcaagtttatcggtttattggtttgagaaggctgatggattttcagaagtatttcaaggcatgta |
203 |
Q |
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| T |
4155251 |
cataattggagatactcctgcaaattcatccatcttcaagtttatcggtttattggtttgagaaggctgatggattttcaagagtatttcaaggcatgta |
4155350 |
T |
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| Q |
204 |
cttaatatatcaagt--aaatatttgctactagtgttgtgcaaatatctccactttttgtgcttggaagttaaatgg---------cagtggtatttttc |
292 |
Q |
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| T |
4155351 |
cttaatatatcaagtaaaaatatttgctactagtgttgtgtaaatatctccactgtttgtgcttggaagttaaatggcactaaggacaatggtatttttc |
4155450 |
T |
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| Q |
293 |
tagacaatggaagatacaattattttt-ggtaaattaataatttacattccttaattaactaattatgatcgctaaataggaaaaatcctaagcgtgtat |
391 |
Q |
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| T |
4155451 |
tag------------acaattatttttgggtaaattaataatttacattccttaattaactaattatcatcgctaaataggaaaaatcctaagcgtgtat |
4155538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 26789966 - 26789852
Alignment:
| Q |
21 |
gatttttggttttgacagagaac-tactaaaaggatggagcaattcgtcaatgaaacatc-tatcataatcaaggttaataaggacataactggaaatac |
118 |
Q |
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|||||||||||||||||| ||| || |||||||||||||||||||| |||| ||| || ||||| |||||||||||| ||||| ||| |||||||||| |
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| T |
26789966 |
gatttttggttttgacaggaaacctattaaaaggatggagcaattcgacaatcaaaattcctatcaaaatcaaggttaacaaggatatacctggaaatac |
26789867 |
T |
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| Q |
119 |
tcctgcaaattcatc |
133 |
Q |
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||| |||||| |||| |
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| T |
26789866 |
tccagcaaatccatc |
26789852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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