View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_low_1 (Length: 811)
Name: NF20193_low_1
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 680; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 15 - 738
Target Start/End: Original strand, 28938360 - 28939084
Alignment:
| Q |
15 |
atgaagaggatgaatcgagatagatgaaatgaaaatgaaattacaagactatcaacattttttataatttcccaatttagtgtctgtcaaaccgaacaca |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28938360 |
atgaagaggatgaatcgagatagatgaaatgaaaatgaaattacaagactatcaacattttctataatttcccaatttagtgtctgtcaaaccgaacaca |
28938459 |
T |
|
| Q |
115 |
tcataattattcaaatccaaataattggaaacttcaattttactgttgttccttctccatttgtgtaatgctcgggtttggtgtacattcaaattgaa-t |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
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| T |
28938460 |
tcataattattcaaatccaaataattggaaacttcaattttactgttgttccttctccatttgtgtaatgctcgtgtttgttgtacattcaaattgaact |
28938559 |
T |
|
| Q |
214 |
acttcatttcatttcattcttttaaagcagcaacatgcttatacatcgatcactacaaattatttaattgagnnnnnnntaaaacaatagggtggaacac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28938560 |
acttcatttcatttcattcttttaaagcagcaacatgcttatacatcgatcactacaaattatttaattgagaaaaaaataaaacaatagggtggaacac |
28938659 |
T |
|
| Q |
314 |
taacttattatcacaatgtgatggtgaatatgtagtagcaaaacaataaaattacagatgagtttgcaaagaatgggaccaagttagtccctaatatata |
413 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28938660 |
taacttattatcacaatgtgatggtgaatatgcagtagcaaaacaataaaattacagatgagtttgcaaagaatgggaccaagttagtccctaatatata |
28938759 |
T |
|
| Q |
414 |
gctagtttgttggttaacattgtgtgtggacgttctcataatggtctagtttctctacccactgctttgccacaaagaagagcattctttggaattggat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28938760 |
gctagtttgttggttaacattgtgtgtggacgttctcataatggtctagtttctctacccactgctttgccacaaagaagagcattctttggaattggat |
28938859 |
T |
|
| Q |
514 |
attcatccctaattgatccagcatctgaatatactcgcatatagaattgttgtccaagatattgtcgtgcccaaaattcactcctcacattccacattcc |
613 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28938860 |
attcatccctaattgatccagcatctgaatatactcgcatatagaattgttgtccaagatattgtcgtgcccaaaattcactcctcacattccacattcc |
28938959 |
T |
|
| Q |
614 |
cacattgtctagtgccatataaattgcagtccatgacttaggatatacctgaggtacaaaaattaaaatatttcaataacttggtcctacatttagctac |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28938960 |
cacattgtctagtgccatataaattgcagtccatgacttaggatatacctgaggtacaaaaattaaaatatttcaataacttggtcctacatttagctac |
28939059 |
T |
|
| Q |
714 |
tataatgatgttcaaagatcaaagg |
738 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
28939060 |
tataatgatgttcaaagatcaaagg |
28939084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 596 - 664
Target Start/End: Original strand, 17134612 - 17134680
Alignment:
| Q |
596 |
cctcacattccacattcccacattgtctagtgccatataaattgcagtccatgacttaggatatacctg |
664 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||| || | ||||||||||||||| ||||| ||||| |
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|
| T |
17134612 |
cctcacattccacattcccacattatccaatggcatgtagagtgcagtccatgacttcggatacacctg |
17134680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 596 - 664
Target Start/End: Complemental strand, 17349357 - 17349289
Alignment:
| Q |
596 |
cctcacattccacattcccacattgtctagtgccatataaattgcagtccatgacttaggatatacctg |
664 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||| || | ||||||||||||||| ||||| ||||| |
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|
| T |
17349357 |
cctcacattccacattcccacattatccaatggcatgtacagtgcagtccatgactttggatacacctg |
17349289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 520
Target Start/End: Complemental strand, 55297450 - 55297411
Alignment:
| Q |
481 |
tgccacaaagaagagcattctttggaattggatattcatc |
520 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
55297450 |
tgccacaaagaagagcattctttgggactggatattcatc |
55297411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 655
Target Start/End: Complemental strand, 55714036 - 55713983
Alignment:
| Q |
602 |
attccacattcccacattgtctagtgccatataaattgcagtccatgacttagg |
655 |
Q |
| |
|
|||||||||||| |||||||| || ||||| || ||||| |||||||||||||| |
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|
| T |
55714036 |
attccacattccaacattgtcaagagccatgtatattgctgtccatgacttagg |
55713983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 543 - 666
Target Start/End: Original strand, 8570402 - 8570525
Alignment:
| Q |
543 |
tatactcgcatatagaattgttgtccaagatattgtcgtgcccaaaattcactcctcacattccacattcccacattgtctagtgccatataaattgcag |
642 |
Q |
| |
|
||||| |||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| | ||| || |||| |
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|
| T |
8570402 |
tatacacgcatataaaactgttgcccaagatattgtcgtgcccaaaattctgacctcaagttccacattcccacattgtcaagtggaacatagatagcag |
8570501 |
T |
|
| Q |
643 |
tccatgacttaggatatacctgag |
666 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
8570502 |
tccatgactttggatatacctgag |
8570525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 663
Target Start/End: Original strand, 53748554 - 53748659
Alignment:
| Q |
558 |
aattgttgtccaagatattgtcgtgcccaaaattcactcctcacattccacattcccacattgtctagtgccatataaattgcagtccatgacttaggat |
657 |
Q |
| |
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|||||||| |||||||| |||||||||||||| || |||||| ||||||||||| || ||||| ||||| | |||||| || |||||||| | |||| |
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| T |
53748554 |
aattgttggccaagatactgtcgtgcccaaaactcggtcctcaagttccacattccaacgttgtcaagtgcaacataaatagccgtccatgaatagggat |
53748653 |
T |
|
| Q |
658 |
atacct |
663 |
Q |
| |
|
|||||| |
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|
| T |
53748654 |
atacct |
53748659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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