View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_low_12 (Length: 328)
Name: NF20193_low_12
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 14327601 - 14327287
Alignment:
| Q |
1 |
aaagcaaaaccataatctttattccctcatacacaacacnnnnnnnnngtggttaaatatggggttattatctgacaattcgcaagtggaaggagggtta |
100 |
Q |
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| T |
14327601 |
aaagcaaaaccataatctttattccctcatacataacactttttttttgtggttaaatatggggttattatctgacaattcacaagtggaaggagggtta |
14327502 |
T |
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| Q |
101 |
gtagaaaactcagagaaaaatagaaaatgggtgatcaatttaagaacaccattgaatttgaagccaatacatacaatccctttggagaaaagtaaacaag |
200 |
Q |
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| T |
14327501 |
gtagaaaattcagagaaaaatagaaaatgggtgatcaatttaagaacaccattgaatttgaagccaatacatacaatccctttggagaaaagtaaacaag |
14327402 |
T |
|
| Q |
201 |
aggaaagtgaaatggaggaagagtgttcaacaacaccaagaggggaaggatcaaggattccaacaactttgatatgtccaccggctccgaggaaacgaaa |
300 |
Q |
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| T |
14327401 |
aggaaagtggcatggaggaagagtgttcaacaacaccaagaggggaaggatcaaggattccaacaactttgatatgtccaccggctccgaggaaacgaaa |
14327302 |
T |
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| Q |
301 |
agcttctttgaaatg |
315 |
Q |
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||||||||||||||| |
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| T |
14327301 |
agcttctttgaaatg |
14327287 |
T |
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