View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_low_17 (Length: 229)
Name: NF20193_low_17
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 9424486 - 9424266
Alignment:
| Q |
8 |
agagagaagaaaaacaatagttagcttgagaggaaagtataatataaccataaggagattgggagataaatgaacttacaatatcaccattagaaattcc |
107 |
Q |
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| T |
9424486 |
agagagaacaaaaacaatagttagcttgagaggaaagtataatataaccataaggagattgggagataaatgaacttacaatatcaccattagaaattcc |
9424387 |
T |
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| Q |
108 |
taagttgaccaaagcagaagcaagcttgagacatctttcataggtttctctccaagaaaatctaacatgatcattgtagatgatggaaactttgtcacca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9424386 |
taagttgaccaaagcagaagcaagcttgagacatctttcataggtttctctccaagaaaatctaacatgatcattgtagatgatggaaactttgtcacca |
9424287 |
T |
|
| Q |
208 |
tacacaggttctgctcgttca |
228 |
Q |
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||||||| ||||||||||| |
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| T |
9424286 |
tacacagtggctgctcgttca |
9424266 |
T |
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