View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_low_2 (Length: 740)
Name: NF20193_low_2
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 362 - 721
Target Start/End: Original strand, 26647619 - 26647974
Alignment:
| Q |
362 |
gcatactggttttggagatggaagtgggactggaatagcgagaaccattctcatctcagtggggggcattctcttggtgatagtttatcgtctttgtaaa |
461 |
Q |
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| T |
26647619 |
gcatactggttttggagatggaagtgggactggaatagtgagaaccattctcatctcagtggggggcattctcttggtgatagtttatcgtctttgtaaa |
26647718 |
T |
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| Q |
462 |
tttcattactgcaaggagattattaatccatccattgtttagcattgcagtatttataagggaatttatcccacagttcacataaaaaatatcactagct |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26647719 |
tttcattactgcaaggagattattaatccatccattgtttagcattgcagtatttataagggaatttatcccacagttcacataaaaaatatcactagtt |
26647818 |
T |
|
| Q |
562 |
gccaccataatctgttatatctttttgctactattgtttgtgtcaattatttggcatttcgaactcaacctgagggagagtatgctgaaatcagggtatc |
661 |
Q |
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| T |
26647819 |
gccatcataatttgttatatctttttgctactattgtttgtgtcaattatttggcatttcgagctcaacctgagggagagtatgctgaaatcagggtatc |
26647918 |
T |
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| Q |
662 |
atcagattcgaatgaaagagggtgatattcacaagactgaatataatttgaactcatgaa |
721 |
Q |
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| T |
26647919 |
atcagattcgaatgaaagagggtgatattcacaagactgaat----tttgaactcatgaa |
26647974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 26647559 - 26647615
Alignment:
| Q |
20 |
atactgataaattcccttatgttttactcttccatgtacatcatggtatgcacatac |
76 |
Q |
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| T |
26647559 |
atactgataaattcccttatgttttactcttccatgtacatcatggtatgcacatac |
26647615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 7e-82; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 85 - 338
Target Start/End: Original strand, 36992609 - 36992855
Alignment:
| Q |
85 |
ccttagatattcttatagctaatatttagcttcccaacatatattctttaaacttaccaagttttaatcctttaggaaaaccataacttaatcacacaat |
184 |
Q |
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|||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
36992609 |
ccttagattttcttatatctaatatttagcttgccaacatatatcctttaaacttac-aagttttaatcctttaggaaaatcatagcttaatcacacaat |
36992707 |
T |
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| Q |
185 |
ttgtcattttctggtcccatgactacatacttataaacttcatcacaatta--cactacacaagttcactaggatcaataaaattagtatgagatcaagg |
282 |
Q |
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| T |
36992708 |
tcatcattttt-------atg-ctacatacttataaacttcatcacaattatacactacacaagttcactaggatcaataaaattagtatgagatcaagg |
36992799 |
T |
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| Q |
283 |
ataaccatctaatagtaagattacacacattttgatattccctgggaagtatcctt |
338 |
Q |
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| T |
36992800 |
ataacgatctaatagtaagataacacacaatttgatattccctgggaagtatcctt |
36992855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 86 - 331
Target Start/End: Original strand, 37002526 - 37002771
Alignment:
| Q |
86 |
cttagatattcttatagctaatatttagcttcccaacatatattctttaaacttaccaagttttaatcctttaggaaaaccataacttaatcacacaatt |
185 |
Q |
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| T |
37002526 |
cttagattttcttatatctaatatttagcttgccaacatatattcttaaaacttac-aagttgaaatccattaggaaaatcataacttaatcacacaatt |
37002624 |
T |
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| Q |
186 |
tgtcattttct-ggtcccatgactacatacttataaacttcatcacaattacactacacaagttcactaggatcaataaaattagtatgagatcaaggat |
284 |
Q |
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| T |
37002625 |
cgtcattttctaggtcccatgactacatacttataaacttcatctgaataacactgcacaagttcactaggatcaataaaattagtaagagctcaaggat |
37002724 |
T |
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| Q |
285 |
aaccatctaatagtaagattacacacattttgatattccctgggaag |
331 |
Q |
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||||||||||||||||||| || |||| |||||||| |||||||||| |
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| T |
37002725 |
aaccatctaatagtaagatcacgcacaatttgatatgccctgggaag |
37002771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 455 - 649
Target Start/End: Original strand, 36993151 - 36993343
Alignment:
| Q |
455 |
ttgtaaatttcattactgcaaggagattattaatccatccattgtttagcattgcagtatttataagggaatttatcccacagttcacataaaaaatatc |
554 |
Q |
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|||||| || |||||||||||||||||||||||||||| |||||||| |||| |||| ||| |||||||||||| ||||||||| |||| || ||| || |
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| T |
36993151 |
ttgtaagttccattactgcaaggagattattaatccataaattgtttaacattccagtctttgtaagggaattta-cccacagttaacatcaataatgtc |
36993249 |
T |
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| Q |
555 |
actagctgccaccataatctgttatatctttttgctactattgtttgtgtcaattatttggcatttcgaactcaacctgagggagagtatgctga |
649 |
Q |
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| T |
36993250 |
actatttgccagcataatttgttatatccttttgttactattatttgtgtcaattatttagtatttagagctcaacctg-gggagagtatgctga |
36993343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 469
Target Start/End: Original strand, 36993021 - 36993141
Alignment:
| Q |
348 |
gggtgtgaagaagagcatactggttttggagatggaagtgggactggaatagcgagaaccattctcatctcagtggggggcattctcttggtgatagttt |
447 |
Q |
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||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||| | ||| ||| |||| |||| ||||| |
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| T |
36993021 |
gggtgtgaagaagagcatactggttttggagttgaaagagggactggaatagtgagaaccattctcatctcagt-gagggtattttcttagtgagagttt |
36993119 |
T |
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| Q |
448 |
atcgtctttgtaaatttcatta |
469 |
Q |
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||| | ||||||| || ||||| |
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| T |
36993120 |
atcatgtttgtaagttccatta |
36993141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 647 - 721
Target Start/End: Original strand, 37004049 - 37004119
Alignment:
| Q |
647 |
tgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaatataatttgaactcatgaa |
721 |
Q |
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|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37004049 |
tgaaattagggtatcatcagattcaaacgaaagagggtgatattcacaagactgaat----tttgaactcatgaa |
37004119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 37002459 - 37002510
Alignment:
| Q |
24 |
tgataaattcccttatgttttactcttccatgtacatcatggtatgcacata |
75 |
Q |
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| T |
37002459 |
tgataaattcccttctgttttactctgacatgtacatcatgatatgcacata |
37002510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 721
Target Start/End: Original strand, 36993754 - 36993824
Alignment:
| Q |
647 |
tgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaatataatttgaactcatgaa |
721 |
Q |
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|||||||||||| ||| |||||||||| ||| |||||||||||||| || ||||| |||||||||||||||| |
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| T |
36993754 |
tgaaatcagggtgtcaccagattcgaacgaaggagggtgatattcaaaaaactga----aatttgaactcatgaa |
36993824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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