View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20193_low_5 (Length: 547)
Name: NF20193_low_5
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 25514555 - 25515065
Alignment:
| Q |
12 |
ataatactcgtaggggtcgacatcgaatttatttttgtattaggtttgnnnnnnnn---ttcttctagattttaacacacaacaaagtgatgagtgtgtt |
108 |
Q |
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| T |
25514555 |
ataatactcgtaggggtcgacatcgaatttatttt-gtattagggttgaaaaaaaaaaattcttctagattttaacacacaacaaagtgatgagtgtgtt |
25514653 |
T |
|
| Q |
109 |
aaaaatctaaggtgcttattctatgag--tggttgatgcaacctggagagtgcatttagagaacttggttgatgcatcttaaagagtgcattttgagaac |
206 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
25514654 |
aaaaatctaaggtgcttattctatgagagtggttgatgcaacctagagagtgcattttgagaatttggttgatgcatcttaaagagtgcattttaagaac |
25514753 |
T |
|
| Q |
207 |
ttaattctttgtacattttaagtggtttgagtatgtagagagaagacttgtagtaagaagatgagattatattgagaatagtcagatcaccagaggtacg |
306 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||| | || ||||||||||| ||||| ||||||| ||||||||| |
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| T |
25514754 |
ttaattctttgtgcattttaagtggtttgagcatgtagagagaaaatttgtagtaagaaaaagatattatattgaggatagtaagatcactagaggtacg |
25514853 |
T |
|
| Q |
307 |
ggtagacnnnnnnnnctctaagataaactattaatcaaatcacgttattttactttttgaactaatttttacaaatgcatacttgatatgatttaattga |
406 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514854 |
gatagaaaaaaaaaactctaagataaactattaatcaaatcacgttattttactttttgaactaatttttacaaatgcatacttgatatgatttaattga |
25514953 |
T |
|
| Q |
407 |
tatataaaagttttatattgtcgatataaataaattaatctctttctttaataaatgtgtaaaaaccttaaattacaaaagaattgaaacagaatatttg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514954 |
tatataaaagttttatattgtcgatataaataaattaatctcttttat-----------taaaaaccttaaattacaaaagaattgaaacagaatatttg |
25515042 |
T |
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| Q |
507 |
tttagcagagaaatgtgttgatt |
529 |
Q |
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||||||||||||||||||||||| |
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| T |
25515043 |
tttagcagagaaatgtgttgatt |
25515065 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 2518635 - 2518599
Alignment:
| Q |
223 |
tttaagtggtttgagtatgtagagagaagacttgtag |
259 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
2518635 |
tttaggtggtttgattatgtagagagaagacttgtag |
2518599 |
T |
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