View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20193_low_7 (Length: 464)
Name: NF20193_low_7
Description: NF20193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20193_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32196420 - 32196197
Alignment:
| Q |
1 |
tccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaatccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32196420 |
tccccaacaaaaaccccaagctaacttccaccaccaccgtagaccaagaaaccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaa |
32196321 |
T |
|
| Q |
101 |
cgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagggattatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32196320 |
cgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgaggagaattccgatgaggagcctgtggtggacaggaagggaaaagggattatg |
32196221 |
T |
|
| Q |
201 |
cgagatgacaagggaaaagggaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32196220 |
cgagatgacaagggaaaagggaaa |
32196197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 288 - 464
Target Start/End: Complemental strand, 32196133 - 32195957
Alignment:
| Q |
288 |
tctgacggcaatgtttctggtagtgacagtgatttttctgatgatccacttgcggaggttgatttggataacattcttccctctaggactcggcggcgaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32196133 |
tctgacggcaatgtttctggtagtgacagtgatttttctgatgatccacttgcggaggttgatttggataacattcttccctctaggactcggcggcgaa |
32196034 |
T |
|
| Q |
388 |
ctgctcagtctggagtgcgcatttctggtggcacgccgaatgctgattagattctactaaggttagtgaggttttag |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32196033 |
ctgctcagtctggagtgcgcatttctggtggcacgccgaatgctgattagattctactaaggttagtgaggttttag |
32195957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 7500917 - 7501005
Alignment:
| Q |
51 |
tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga |
139 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| ||||| |
|
|
| T |
7500917 |
tccgaacttccctccaccgtcaattgctcttccgacgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga |
7501005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 43059791 - 43059679
Alignment:
| Q |
51 |
tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacgacgaggatgagg |
150 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||| |
|
|
| T |
43059791 |
tccgaacttacctccaccgtcaattgctcttccgacgtcgttcccaacaacgaacccgaaaataacactgacgaagatgacgaagaggacgaagacgagg |
43059692 |
T |
|
| Q |
151 |
agaattccgatga |
163 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
43059691 |
agaatttcgatga |
43059679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 10007402 - 10007314
Alignment:
| Q |
51 |
tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga |
139 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| |||| ||||| || ||||| ||||| |
|
|
| T |
10007402 |
tccgaacttccctccaccgtcaattgctcttctgacgccgatcccaacaacgaacccgaaaatgacaccgacgaagacgacgaggacga |
10007314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 47615210 - 47615122
Alignment:
| Q |
51 |
tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga |
139 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || ||||| ||||||||||||||||||||| |||||||||| || ||||| ||||| |
|
|
| T |
47615210 |
tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaacccgaaaatgacactgacgaagacgacgaggacga |
47615122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 7315935 - 7315865
Alignment:
| Q |
54 |
gaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacga |
124 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
7315935 |
gaacttccctccaccgtcaattgctcttccgacaccgatcccaacaacgaacccgaaaatgacactgacga |
7315865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 18486537 - 18486449
Alignment:
| Q |
51 |
tccgaacttcccaccaccgtcaattcttcttccgacgccgttcccaacaacgaacccgaaaacaacactgacgacgatgacgaagacga |
139 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || ||||| |||||||||||||| |||||| |||||||||| || ||||| ||||| |
|
|
| T |
18486537 |
tccgaacttccctccaccgtcaattgctctttcgtcgccgatcccaacaacgaactcgaaaatgacactgacgaagacgacgaggacga |
18486449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University