View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_15 (Length: 399)
Name: NF20194_high_15
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 21198966 - 21199236
Alignment:
| Q |
18 |
ctacattggttacaactttgcaattgaaaaataataaagtgtgtttggttttcgggtggcgatgctagcaagttggtctctcctagtgctaaaagggtga |
117 |
Q |
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| T |
21198966 |
ctacattggttacaactttgcaattgaaaaataataaagtgtgtttggttttcgggtggcgatgctagcaagttggtctctcctagtgctaaaagggtga |
21199065 |
T |
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| Q |
118 |
ttaataaaccaatgtggctcaaaa-ctttatacttaagtaaaattgttgttgtttgtaatttcttattttcccttaagaggccatcagcccaattgtcta |
216 |
Q |
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| T |
21199066 |
ttaataaaccaatgtggctcaaaaactttatacttaagtaaaagtgttgttgtttgtaatttcttattttcccttaagaggccatcagcccaattgtcta |
21199165 |
T |
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| Q |
217 |
agcctatcagggcagcaaccctagctatataaggctattgttcctatcttaagaattatgaataaagtaaa |
287 |
Q |
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| T |
21199166 |
agcctatcagggcagcaaccctagctatataaggctattgttcctatcttaagaattatgaataaagtaaa |
21199236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 390
Target Start/End: Original strand, 21199306 - 21199339
Alignment:
| Q |
357 |
aaccaagaacctagtatcattggtgctttcatct |
390 |
Q |
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| T |
21199306 |
aaccaagaacctagtatcattggtgctttcatct |
21199339 |
T |
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