View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_17 (Length: 379)
Name: NF20194_high_17
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 2022750 - 2022396
Alignment:
| Q |
7 |
aatatcctaaagctttaatcacaactattatcaaaatgtactacacagatatgaaatgattgaatgtggctcataggttaccgataagtggacaagtcgc |
106 |
Q |
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| T |
2022750 |
aatatcctaaagctttaatcacaactattatcaaaatgtactacacagatatgaaatgattgaatgtggctcataggttaccgataagtggacaagtcgc |
2022651 |
T |
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| Q |
107 |
tcaagcgcgggacataatttagggataattttgtaaatatagtcaaataaattcaagatgatatcaaaatagtctaatcctaatcacccgcaatcttagc |
206 |
Q |
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| T |
2022650 |
tcaagcgcgggacataatttagggataattttgtaaatatagtcaaataaattcaagataatatcaaaatagtctaatcctaatcacccgcaatcttggc |
2022551 |
T |
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| Q |
207 |
caccacatcaaagttttcaatatttgactataattctcaggaatattaaggatcgtgtcacaatcatgatgtcttatttgttcctataatcactatgctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2022550 |
caccacatcaaagttttcaatatttgactataattctcaggaatattaaggatcgtgtcacaatcatgatgtcttatttgttcctataatcactatgctt |
2022451 |
T |
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| Q |
307 |
gtgcaatagttaatctnnnnnnnttaaatattgcatctaacatacctgcatactg |
361 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2022450 |
gtgcaatagttaatctaaaaaaattaaatattgcatctaacatacctgcatactg |
2022396 |
T |
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