View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_18 (Length: 377)
Name: NF20194_high_18
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 4408196 - 4407837
Alignment:
| Q |
18 |
aacccctttaatcaatattaacttcttgccaattcatgtcaaaaaggaccgatttttacatgtgggtttttatgggaatgacattttatgacgtgggtga |
117 |
Q |
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| T |
4408196 |
aacccctttaatcaatattaacttcttgccaattcatgtcaaaaaggaccgatttttacatgtgggtttttatgggaatgacattttatgacgtgggtga |
4408097 |
T |
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| Q |
118 |
ttgtgtttttgtaggggaaagtgaaacaaattgttgggtcaacccttaaagatttgaaagatgatgatgggtcagatccaatcactaattttgagtctga |
217 |
Q |
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| T |
4408096 |
ttgtgtttttgtaggggaaagtgaaacaaattgttgggtcaacccttaaagatttgaaagatgatgatgggtcagatccaatcactaattttgagtctga |
4407997 |
T |
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| Q |
218 |
taaatcggcagctgagtatgctactctttacaaacaagatggacttaaaggtggtcatgttatcatgcttggtgctgatcctttcagtaaagctgcttct |
317 |
Q |
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| T |
4407996 |
taaatcggcagctgagtatgctactctttacaaacaagatggacttaaaggtggtcatgttatcatgcttggtgctgatcctttcagtaaagctgcttct |
4407897 |
T |
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| Q |
318 |
cttgaagcattacatgcttatcctggtattatagtttcattacaccatttgttccttttc |
377 |
Q |
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| T |
4407896 |
cttgaagcattacatgcttatcctggtattatagtttgattacaccatttgttccttttc |
4407837 |
T |
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