View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_19 (Length: 377)
Name: NF20194_high_19
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 31940450 - 31940098
Alignment:
| Q |
1 |
tatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940450 |
tatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtac |
31940351 |
T |
|
| Q |
101 |
cgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcccttttagggggcaaacttcag |
200 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31940350 |
cgtatcttgaattgatattatgtagtactgtcattttatctttgttgctctatgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcag |
31940251 |
T |
|
| Q |
201 |
ggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttg |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31940250 |
ggacctcaagggagtgcttgttaaagaaaaaaaggtggaatgggacccctctgttgaaagagtgtatctaaaatctggaaagcctttggtactaatcttg |
31940151 |
T |
|
| Q |
301 |
tcatgtcttagggacacctttattttgaagttagttctttgttgaccacacac |
353 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31940150 |
tcttgtcttagggacacatttattttgaagttagttctttgttgaccacacac |
31940098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 336
Target Start/End: Complemental strand, 13536453 - 13536352
Alignment:
| Q |
235 |
gtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttgtcatgtcttagggacacctttattttgaagttag |
334 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| | |||||||||||||| |||||||| ||| ||| |
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| T |
13536453 |
gtggaatgggacccctctgttgaaagacaattactaaaatctggcaagcctttggtattaatctcttgttgtcttagggacacatttatttttaagctag |
13536354 |
T |
|
| Q |
335 |
tt |
336 |
Q |
| |
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|| |
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| T |
13536353 |
tt |
13536352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 13536977 - 13536880
Alignment:
| Q |
11 |
caccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatctt |
108 |
Q |
| |
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|||||||||| ||||| ||||||||| || ||| ||||||| | ||||| ||||||||||| |||||||||||| | |||||||| || |||||| |
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| T |
13536977 |
caccaagtggaatgctatatgatcacttcccattggaattaaacaaagatgattatgagagagtctgccacattccacacaagaaggttccctatctt |
13536880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 1338628 - 1338288
Alignment:
| Q |
7 |
agtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatc |
106 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |
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| T |
1338628 |
agtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaaggagaaggttccctatc |
1338529 |
T |
|
| Q |
107 |
ttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcccttttagggggcaaacttcagggacct |
206 |
Q |
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|| |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1338528 |
tttaattgatattat---gtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcctttttagggggcaaacttcagggacct |
1338432 |
T |
|
| Q |
207 |
caagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttgtcatgt |
306 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||| ||| || |||||||| ||||||||||||| ||||| |||||||||||| |||| ||| |
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| T |
1338431 |
caagggtgttcttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgtatctaaaatctgggaagcccttggtactaatcctgtcttgt |
1338332 |
T |
|
| Q |
307 |
cttagggacacctttattttgaagttagttctttgttgaccaca |
350 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
1338331 |
cttagggacacatttattttgaagttatttctttgttgaccaca |
1338288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 9390777 - 9390454
Alignment:
| Q |
7 |
agtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
9390777 |
agtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtatcatatc |
9390678 |
T |
|
| Q |
107 |
ttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcccttttagggggcaaacttcagggacct |
206 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9390677 |
ttgaattgatattatgta---ctgttatt----------------atgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcagggacct |
9390597 |
T |
|
| Q |
207 |
caagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttgtcatgt |
306 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |
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| T |
9390596 |
caagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaaatctggaaagcctttggtactaatcttgacttgt |
9390497 |
T |
|
| Q |
307 |
cttagggacacctttattttgaagttagttctttgttgaccaca |
350 |
Q |
| |
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||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
9390496 |
ctt-gggacacatttattttgaagttagttctttgttgaccaca |
9390454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 5640515 - 5640178
Alignment:
| Q |
7 |
agtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatc |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||| ||||||||||| || ||| |
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|
| T |
5640515 |
agtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaagaaggttcctgatc |
5640416 |
T |
|
| Q |
107 |
ttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcc-cttttagggggcaaacttcagggacc |
205 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
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|
| T |
5640415 |
ttgaattgatattat---gttctgttattttatctttgttgctccctgtaaattttaattgtgcattcttgccttttttagggggcaaacttcagggacc |
5640319 |
T |
|
| Q |
206 |
tcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttgtcatg |
305 |
Q |
| |
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| ||||| |||||||| |||| ||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| | || |
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|
| T |
5640318 |
taaagggtgtgcttgtgaaagaaaaaaaagtggagtgggacccctctgttgaaagagtgtatctgaaatctgggaagcctttggtactaatcttctgttg |
5640219 |
T |
|
| Q |
306 |
tcttagggacacctttattttgaagttagttctttgttgac |
346 |
Q |
| |
|
||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
5640218 |
ccttagcgatgcatttattttgaagttagttctttgttgac |
5640178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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