View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_21 (Length: 368)
Name: NF20194_high_21
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 215 - 348
Target Start/End: Complemental strand, 52714658 - 52714525
Alignment:
| Q |
215 |
acaaaaaacaccaaatttagttttgcataaaagattacaagtagaggaatatactacttttacttctcttaaaataagaatactccttcatggttgtgtg |
314 |
Q |
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| T |
52714658 |
acaaaaaacaccaaatttagttttgcataaaagattacaagtagaggaatatactacttttacttctcttaaaatatgaatactccttcatggttgtgtg |
52714559 |
T |
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| Q |
315 |
tgttggacgttgctgaattcaaccatgttctcat |
348 |
Q |
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| T |
52714558 |
tgctggacgttgctgaattcaaccatgttctcat |
52714525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 221 - 345
Target Start/End: Complemental strand, 52700377 - 52700254
Alignment:
| Q |
221 |
aacaccaaatttagttttgcataaaagattacaagtagaggaatatactacttttacttctcttaaaataagaatactccttcatggttgtgtgtgttgg |
320 |
Q |
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| T |
52700377 |
aacaccaaatttagttttgcataacagattacaaacagaggaatatactgctattacttctcttaaaatatgaatactcctt-atggttatgtgcactgg |
52700279 |
T |
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| Q |
321 |
acgttgctgaattcaaccatgttct |
345 |
Q |
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| T |
52700278 |
acgttacttaattcaaccatgttct |
52700254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 140 - 348
Target Start/End: Complemental strand, 52723764 - 52723547
Alignment:
| Q |
140 |
ttttgtaattcgaagatcatttgaattattattatgtttcataatttatttataaaaatttcaatcatacataaaacaaaa-aacaccaaatttagtttt |
238 |
Q |
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| T |
52723764 |
ttttgtaattcgaagatcatttgaa-tattattatgtttcatagtttgtttataagaattttgagaatgcataaaataaaagaacaccaaatttagtttt |
52723666 |
T |
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| Q |
239 |
gcat----aaaagattacaagtagaggaata------tactacttttacttctcttaaaataagaatactccttcatggttgtgtgtgttggacgttgct |
328 |
Q |
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| T |
52723665 |
tcataataaatagattacaaacagaggaatatactattactactattacttctcttaaaa-atgaatcctccttaatggttacgtgtgatggacgttact |
52723567 |
T |
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| Q |
329 |
gaattcaaccatgttctcat |
348 |
Q |
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| T |
52723566 |
taattcaaccatgttctcat |
52723547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 10601777 - 10601815
Alignment:
| Q |
13 |
tctatatataccttctctctagcgctaaaccctctcaac |
51 |
Q |
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| T |
10601777 |
tctatctataccttctctctaacgctaaaccctctcaac |
10601815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 6649333 - 6649289
Alignment:
| Q |
80 |
tcaaaagtttgaaccccc-gacccaggatcctgacaacgccactg |
123 |
Q |
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| T |
6649333 |
tcaaaagtttgaaccccctgacctaggatcctgactacgccactg |
6649289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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