View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20194_high_24 (Length: 339)
Name: NF20194_high_24
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 46 - 327
Target Start/End: Original strand, 23852797 - 23853078
Alignment:
| Q |
46 |
actaagatacttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852797 |
actaagatacttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgt |
23852896 |
T |
|
| Q |
146 |
gggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagagg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852897 |
gggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagagg |
23852996 |
T |
|
| Q |
246 |
aaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852997 |
aaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
23853078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 141 - 327
Target Start/End: Original strand, 23752191 - 23752377
Alignment:
| Q |
141 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
240 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
23752191 |
tttgtgggtagcatggattcctaaggtcaattttaacaacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
23752290 |
T |
|
| Q |
241 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
327 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
23752291 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagttcaagaagtgcttgcctctcttgttctatgcaaccaaatgatga |
23752377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 141 - 327
Target Start/End: Original strand, 22619584 - 22619770
Alignment:
| Q |
141 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
240 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
22619584 |
tttgtgggtagcatggattcctaaggtcaatttttataacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
22619683 |
T |
|
| Q |
241 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
327 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||| | | | |||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
22619684 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagtgctaaaagagcttgcctctcttgttctaagcaaccaaatgatga |
22619770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University