View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_26 (Length: 294)
Name: NF20194_high_26
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_26 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 25625211 - 25624935
Alignment:
| Q |
18 |
cttttggctcagatttcaaaggttttccgtttgggacaaatatcctatggtaattttcatatgcaacattgttgtgtttgagacgcttcgcaagtgcctt |
117 |
Q |
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| T |
25625211 |
cttttggctcagatttcaaaggttttccgtttgggacaaatatcctatggtaattttcatatgcaacattgttgtgtttgagatgcttcgcaagtgcctt |
25625112 |
T |
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| Q |
118 |
aaggaaatcattcatcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctttctctttcttgagaagaagt |
217 |
Q |
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| T |
25625111 |
aaggaaatcattcatcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctttctctttcttgagaagaagt |
25625012 |
T |
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| Q |
218 |
gaatacccaacagaactgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctcggc |
294 |
Q |
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| T |
25625011 |
gaatacccaacagaactgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctcggc |
25624935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 25605565 - 25605306
Alignment:
| Q |
32 |
ttcaaaggttttccgtttgggacaaatatcctatggtaattttcatatgcaacattgttgtgtttgagacgcttcgcaagtgccttaaggaaatcattca |
131 |
Q |
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| T |
25605565 |
ttcaaaggtttcccatctgggacaaatatcctatggtaattttcatatgcagcattgttgtgtttgagacgctttgcaagtgcctttaggaaatccttca |
25605466 |
T |
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| Q |
132 |
tcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctttctctttcttgagaagaagtgaatacccaacaga |
231 |
Q |
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| T |
25605465 |
tcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttctctttcttgagaagaagtgaatacccaacaga |
25605366 |
T |
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| Q |
232 |
actgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctc |
291 |
Q |
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| T |
25605365 |
gctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctc |
25605306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 20435578 - 20435382
Alignment:
| Q |
98 |
agacgcttcgcaagtgccttaaggaaatcattcatcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctt |
197 |
Q |
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||||||||||| || || |||| ||||| |||||||| ||||| ||||||| ||| ||||| ||||||||||| ||| |||| ||||||||| |||| |
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| T |
20435578 |
agacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcaggctgaacaataatagctt |
20435479 |
T |
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| Q |
198 |
tctctttcttgagaagaagtgaatacccaacagaactgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctcggc |
294 |
Q |
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| T |
20435478 |
tttctttcttcaaaagaagtgagtatccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggc |
20435382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 5331675 - 5331479
Alignment:
| Q |
98 |
agacgcttcgcaagtgccttaaggaaatcattcatcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctt |
197 |
Q |
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||||||||||| || || |||| ||||| |||||||| ||||| ||||||| || ||||| ||||||||||| ||| |||| |||||| || |||| |
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| T |
5331675 |
agacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgttggaccatttccaatcacaaccctatcaggctgaacaattatagctt |
5331576 |
T |
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| Q |
198 |
tctctttcttgagaagaagtgaatacccaacagaactgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctcggc |
294 |
Q |
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| T |
5331575 |
tttctttcttcaaaagaagcgagtaaccaacagaactgtagtcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggc |
5331479 |
T |
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