View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_high_31 (Length: 267)

Name: NF20194_high_31
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20194_high_31
NF20194_high_31
[»] chr7 (16 HSPs)
chr7 (125-262)||(3617746-3617883)
chr7 (125-255)||(29058446-29058576)
chr7 (128-258)||(29071671-29071801)
chr7 (125-258)||(29069209-29069342)
chr7 (125-254)||(29078408-29078537)
chr7 (148-258)||(29111155-29111265)
chr7 (167-262)||(29072884-29072979)
chr7 (178-258)||(29098134-29098214)
chr7 (179-258)||(28956624-28956703)
chr7 (125-257)||(3618768-3618900)
chr7 (170-262)||(29113378-29113470)
chr7 (125-209)||(29064475-29064559)
chr7 (179-262)||(29101859-29101942)
chr7 (167-262)||(29115992-29116087)
chr7 (10-59)||(3617949-3617998)
chr7 (10-59)||(29071870-29071919)
[»] chr4 (4 HSPs)
chr4 (128-258)||(11851371-11851501)
chr4 (137-258)||(11854094-11854215)
chr4 (125-262)||(11850189-11850326)
chr4 (10-59)||(11851253-11851302)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 125 - 262
Target Start/End: Complemental strand, 3617883 - 3617746
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3617883 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaacaaagagaatgactctgattgttgtgtacaaggaa 3617784  T
Q  225 aaatgtacacaacttatgaatgttcaccatcagtatct 262  Q
    | ||||||||||||||||||||||||||||||||||||    
T  3617783 agatgtacacaacttatgaatgttcaccatcagtatct 3617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 29058576 - 29058446
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaa 224  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  29058576 gaagctcaaaagtgtcgtccaaacggtagaatcaggggaaagaaagctccatctggacaatgcaacaaagagaatgactctgattgttgtgtacaaggaa 29058477  T
Q  225 aaatgtacacaacttatgaatgttcaccatc 255  Q
    | |||||||||||||||||||||||||||||    
T  29058476 agatgtacacaacttatgaatgttcaccatc 29058446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 29071801 - 29071671
Alignment:
Q  128 gctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaa 227  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |    
T  29071801 gctcaaaagtgtcgtccaaacggtagaatcaggggaaagaaagctccatcgggacaatgcaacaaagagaatgactctgattgttgtgtacaaggaaaga 29071702  T
Q  228 tgtacacaacttatgaatgttcaccatcagt 258  Q
    |||||||||||||||||||||||||||||||    
T  29071701 tgtacacaacttatgaatgttcaccatcagt 29071671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 29069342 - 29069209
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaa 224  Q
    |||||||| || |||||||| | ||||||||| || ||||||||||||||  | |||||||||||| ||||||| |||||||||||||||||||||||||    
T  29069342 gaagctcagaactgtcgtccaagcggtagaattagaggaaagaaagctcctccaggacaatgtaatcaagagaacgattctgattgttgtgtacaaggaa 29069243  T
Q  225 aaatgtacacaacttatgaatgttcaccatcagt 258  Q
    ||||||||||||| |||| |||||| ||||||||    
T  29069242 aaatgtacacaacatatgtatgttctccatcagt 29069209  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 29078537 - 29078408
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaa 224  Q
    |||||||| || |||||||| | ||||||||| || ||||||||||||||  | |||||||| ||| |||||||||||||||||||||||||| ||||||    
T  29078537 gaagctcagaattgtcgtccaagcggtagaattagaggaaagaaagctcctccaggacaatgcaatcaagagaatgattctgattgttgtgtagaaggaa 29078438  T
Q  225 aaatgtacacaacttatgaatgttcaccat 254  Q
    |||||||||||||||||| |||||||||||    
T  29078437 aaatgtacacaacttatgtatgttcaccat 29078408  T

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Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 29111265 - 29111155
Alignment:
Q  148 cggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgt 247  Q
    ||||||||| || ||||||||||||||  | ||| |||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  29111265 cggtagaattagaggaaagaaagctcctccaggaaaatgcaatcaagagaatgattctgattgttgcgtacaaggaaaaatgtacacaacttatgtatgt 29111166  T
Q  248 tcaccatcagt 258  Q
    |||||||||||    
T  29111165 tcaccatcagt 29111155  T

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Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 29072884 - 29072979
Alignment:
Q  167 aaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgttcaccatcagtatct 262  Q
    |||||||| || |||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  29072884 aaagctccttccggacaatgtaatcaggagaatgactctgattgttgtgtacagggaaaaatgtacacaacttataaatgttcaccatcagtatct 29072979  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 29098134 - 29098214
Alignment:
Q  178 tggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgttcaccatcagt 258  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  29098134 tggacaatgcaatcaagagaatgattctgattgttgtgtacaaggacaaatgtatacaacttatgaatgttcgccatcagt 29098214  T

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Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 28956624 - 28956703
Alignment:
Q  179 ggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgttcaccatcagt 258  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  28956624 ggacaatgtaatcaagagaacgattctgattgttgtgtacaagaaaaaatgtacacaacttatgaatgttctccagcagt 28956703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 3618768 - 3618900
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaa 224  Q
    ||||| ||| |||||||||| |  |||||||| |  ||| | |||||||| || |||||||| ||  | |||||||| ||||||||||||||||||||||    
T  3618768 gaagcccaacagtgtcgtccaagtggtagaattaaaggagaaaaagctccttccggacaatgcaaccaggagaatgactctgattgttgtgtacaaggaa 3618867  T
Q  225 aaatgtacacaacttatgaatgttcaccatcag 257  Q
    ||||||||||||||||| |||||||||| ||||    
T  3618868 aaatgtacacaacttatcaatgttcaccgtcag 3618900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 29113378 - 29113470
Alignment:
Q  170 gctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgttcaccatcagtatct 262  Q
    ||||| |||| |||||| ||| |||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  29113378 gctccttctgcacaatgcaatcaagagaatgattctgattgttgggtacaaggacaaatgtgtacaacttatgaatgttcgccatcagtatct 29113470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 29064559 - 29064475
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgatt 209  Q
    |||||||||||||||||||| || |||||||| |||||||||||||| ||||||| |||||| || ||||||||||| |||||||    
T  29064559 gaagctcaaaagtgtcgtccaaatggtagaatgaggggaaagaaagcaccatctgaacaatgcaacaaagagaatgactctgatt 29064475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 29101859 - 29101942
Alignment:
Q  179 ggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgttcaccatcagtatct 262  Q
    |||||||||||  | |||||||| ||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||    
T  29101859 ggacaatgtaaccaggagaatgactctgattgttgtgtacagggaaaaatgtacacaacatataaatgctcaccatcagtatct 29101942  T

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Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 29115992 - 29116087
Alignment:
Q  167 aaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaacttatgaatgttcaccatcagtatct 262  Q
    |||||||| || |||||||| ||  | || |||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  29115992 aaagctccttccggacaatgcaaccaggaaaatgattcagattgttgtgtgcaaggaaaaatgtacacaacttataaatgctcaccatcagtatct 29116087  T

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Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 3617998 - 3617949
Alignment:
Q  10 agaagaagaactaaaagaagaaatatagagttgcatagacaaaatgaaga 59  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3617998 agaagaagaactaaaaggagaaatatagagttgcatagacaaaatgaaga 3617949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 29071919 - 29071870
Alignment:
Q  10 agaagaagaactaaaagaagaaatatagagttgcatagacaaaatgaaga 59  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||    
T  29071919 agaacaagaactaagaggagaaatatagagttgcatagacaaaatgaaga 29071870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 128 - 258
Target Start/End: Original strand, 11851371 - 11851501
Alignment:
Q  128 gctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaa 227  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |    
T  11851371 gctcaaaagtgtcgtccaaacggtagaatcaggggaaagaaagctccatcgggacaatgcaacaaagagaatgactctgattgttgtgtacaaggaaaga 11851470  T
Q  228 tgtacacaacttatgaatgttcaccatcagt 258  Q
    |||||||||||||||||||||||||||||||    
T  11851471 tgtacacaacttatgaatgttcaccatcagt 11851501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 11854094 - 11854215
Alignment:
Q  137 tgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaaaaatgtacacaa 236  Q
    |||||||| | ||||||||| || ||||||||||||||  | |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  11854094 tgtcgtccaagcggtagaattagaggaaagaaagctcctccaggacaatgcaatcaagagaacgattctgattgttgtgtacaaggaaaaatgtacacaa 11854193  T
Q  237 cttatgaatgttcaccatcagt 258  Q
    | |||| |||||| ||||||||    
T  11854194 catatgtatgttctccatcagt 11854215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 125 - 262
Target Start/End: Complemental strand, 11850326 - 11850189
Alignment:
Q  125 gaagctcaaaagtgtcgtccgaacggtagaatcaggggaaagaaagctccatctggacaatgtaataaagagaatgattctgattgttgtgtacaaggaa 224  Q
    ||||||||| |||||||||| |  |||||||| |  ||| | |||||||| ||  ||||||||||  | |||||||| | ||||||||||||||| ||||    
T  11850326 gaagctcaacagtgtcgtccaagtggtagaattaaaggagaaaaagctccttcaagacaatgtaaccaggagaatgactttgattgttgtgtacagggaa 11850227  T
Q  225 aaatgtacacaacttatgaatgttcaccatcagtatct 262  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11850226 aaatgtacacaacttataaatgttcaccatcagtatct 11850189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11851253 - 11851302
Alignment:
Q  10 agaagaagaactaaaagaagaaatatagagttgcatagacaaaatgaaga 59  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||    
T  11851253 agaacaagaactaagaggagaaatatagagttgcatagacaaaatgaaga 11851302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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