View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_36 (Length: 250)
Name: NF20194_high_36
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 47728636 - 47728394
Alignment:
| Q |
1 |
aatttggttatgaaggcatgtccctattatttatttttattttgctgaaacatgtcttaattttaatccatgatgnnnnnnnagaaaattcatataacaa |
100 |
Q |
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| T |
47728636 |
aatttggttatgaaggcatgtccctattatttatttttattttgctgaaacatgtcataattttaatccatgatgtttttttagaaaattcatataacaa |
47728537 |
T |
|
| Q |
101 |
atacctaacgcattttatgaacctggtgtcagacagaataaatgccttacttggagattcatatttcatgtaatgttttcaattctgcagttcaattagt |
200 |
Q |
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|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728536 |
atacctaatgtatttgatgaacctggtgtcagacagaataaatgccttacttggagattcatatttcatgtaatgttttcaattctgcagttcaattagt |
47728437 |
T |
|
| Q |
201 |
ctgacataatagaaatattttattaacattataacctttgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47728436 |
ctgacataatagaaatattttattaacattataacctatgctt |
47728394 |
T |
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