View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_high_40 (Length: 215)

Name: NF20194_high_40
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20194_high_40
NF20194_high_40
[»] chr2 (2 HSPs)
chr2 (65-204)||(27188193-27188332)
chr2 (65-204)||(27838007-27838146)
[»] chr5 (1 HSPs)
chr5 (41-74)||(10169014-10169047)
[»] chr7 (2 HSPs)
chr7 (41-73)||(36204464-36204496)
chr7 (41-73)||(36801883-36801915)
[»] chr4 (5 HSPs)
chr4 (41-73)||(13306935-13306967)
chr4 (41-73)||(31843786-31843818)
chr4 (41-73)||(40489523-40489555)
chr4 (41-73)||(44120755-44120787)
chr4 (45-73)||(44121070-44121098)
[»] chr1 (2 HSPs)
chr1 (41-73)||(6912463-6912495)
chr1 (41-73)||(46038899-46038931)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 27188193 - 27188332
Alignment:
Q  65 ctatctttttcatcttctttcccgtctcatatttaatctaccctcccttttgcaatttaggactaaaacattgttttctctcacacatgggccaagcccg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  27188193 ctatttttttcatcttctttcccgtctcatatttaatctaccctcccttttgcaatttaggactaaaacattgttttctctcacacatgggctaagccca 27188292  T
Q  165 ttacnnnnnnnctttctatttaacttgggattttgttcat 204  Q
    ||||       |||||||||||||||||||||||||||||    
T  27188293 ttactttttttctttctatttaacttgggattttgttcat 27188332  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 27838007 - 27838146
Alignment:
Q  65 ctatctttttcatcttctttcccgtctcatatttaatctaccctcccttttgcaatttaggactaaaacattgttttctctcacacatgggccaagcccg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  27838007 ctatttttttcatcttctttcccgtctcatatttaatctaccctcccttttgcaatttaggactaaaacattgttttctctcacacatgggctaagccca 27838106  T
Q  165 ttacnnnnnnnctttctatttaacttgggattttgttcat 204  Q
    ||||       |||||||||||||||||||||||||||||    
T  27838107 ttactttttttctttctatttaacttgggattttgttcat 27838146  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 10169014 - 10169047
Alignment:
Q  41 aggtttaattacacttttggccccctatcttttt 74  Q
    |||||||||| |||||||||||||||||||||||    
T  10169014 aggtttaattgcacttttggccccctatcttttt 10169047  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 36204496 - 36204464
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||| ||||||||||||||||||||||    
T  36204496 aggtttaattgcacttttggccccctatctttt 36204464  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 36801915 - 36801883
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||| ||||||||||||||||||||||    
T  36801915 aggtttaattgcacttttggccccctatctttt 36801883  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 13306967 - 13306935
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||| ||||||||||||||||||||||    
T  13306967 aggtttaattgcacttttggccccctatctttt 13306935  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 31843786 - 31843818
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||||||||||||| ||||||||||||    
T  31843786 aggtttaattacacttttggacccctatctttt 31843818  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 40489555 - 40489523
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||||||| ||||||||||||||||||    
T  40489555 aggtttaattacacgtttggccccctatctttt 40489523  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 44120755 - 44120787
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||| ||||||||||||||||||||||    
T  44120755 aggtttaattgcacttttggccccctatctttt 44120787  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 44121098 - 44121070
Alignment:
Q  45 ttaattacacttttggccccctatctttt 73  Q
    |||||||||||||||||||||||||||||    
T  44121098 ttaattacacttttggccccctatctttt 44121070  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 6912495 - 6912463
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||| ||||||||||||||||||||||    
T  6912495 aggtttaattgcacttttggccccctatctttt 6912463  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 46038899 - 46038931
Alignment:
Q  41 aggtttaattacacttttggccccctatctttt 73  Q
    |||||||||| ||||||||||||||||||||||    
T  46038899 aggtttaattgcacttttggccccctatctttt 46038931  T

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