View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_5 (Length: 686)
Name: NF20194_high_5
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 73 - 668
Target Start/End: Original strand, 36448120 - 36448715
Alignment:
| Q |
73 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448120 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
36448219 |
T |
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| Q |
173 |
ggaactgaagtaaactagatagaaatcacaacctccatttccaaaaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448220 |
ggaactgaagtaaactagatagaaatcacaacctccatttccataaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
36448319 |
T |
|
| Q |
273 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448320 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
36448419 |
T |
|
| Q |
373 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcccgattctcctatcctcatcccgaaccacgcgcttcgtagtttaa |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448420 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcctgattctcctatcctcatcccgaaccacgcgcttcgtagtttaa |
36448519 |
T |
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| Q |
473 |
tttctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaattcttcttcttccgattccaa |
572 |
Q |
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| T |
36448520 |
tctctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaattcttcttcttccgattccaa |
36448619 |
T |
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| Q |
573 |
aattgactcgcttcgtcaacttgctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctctgctgtgctttt |
668 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36448620 |
aattgactcgcttcgtcaactcgctcgtctttctaaacgtgatgccagtttccgtcgtcgtcttgttgattccggtgccgtctctgctgtgctttt |
36448715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 11446882 - 11446955
Alignment:
| Q |
595 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctctgctgtgctttt |
668 |
Q |
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| T |
11446882 |
gctcgtctttctaaacatgatgctaattttcgtcgccgtcttgttgattcaggtgccgtctccgccgtgctttt |
11446955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 2535366 - 2535293
Alignment:
| Q |
595 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctctgctgtgctttt |
668 |
Q |
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| T |
2535366 |
gctcgtctttctaaacgtgatgctaattttcgtcgttgtcttgttgattcaggtgccgtctccgccgtgctttt |
2535293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 15972047 - 15972087
Alignment:
| Q |
286 |
gaacacttcaaatgtccaatctcactcgaaataatgtccga |
326 |
Q |
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| T |
15972047 |
gaacacttcaaatgtccaatttcacttgaaatcatgtccga |
15972087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 417
Target Start/End: Complemental strand, 2660305 - 2660174
Alignment:
| Q |
286 |
gaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatccaacgttggcttg |
385 |
Q |
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|||||||| || || ||||| || || ||||| |||||||| || || |||||||| |||||||| || || || ||| |||||||||||| ||||||| |
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| T |
2660305 |
gaacacttgaagtgcccaatttcgcttgaaattatgtccgatccggttatcctctcctccggtcagacctttgaccgttcttcaatccaacaatggcttg |
2660206 |
T |
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| Q |
386 |
acgaaggtcatcgtacttgtccaattaccaaa |
417 |
Q |
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| T |
2660205 |
acctaggtcaccggaaatgtccaatcaccaaa |
2660174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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