View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_8 (Length: 581)
Name: NF20194_high_8
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 178 - 565
Target Start/End: Original strand, 33051601 - 33051989
Alignment:
| Q |
178 |
ccctcgagtccagattaacacaccagttatagaaaagacagtgtcccattgtctttgtcagaaatcattttaagactgttttaataagttcaatcatgct |
277 |
Q |
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| T |
33051601 |
ccctcgagtccagattaacacaccacttatagaaaagacagtgtcccattgtctttgtcagaaatcattttaagactgttttaataagttcaatcatgct |
33051700 |
T |
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| Q |
278 |
aggaaccttcatgaccgagtctgaaagaactctttaannnnnnngtggctcaaatttcctaaatcattgattgtcaaattaagtctagacccttcacccc |
377 |
Q |
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| T |
33051701 |
aggaaccttcatgaccgagtctgaaagaactcttcaatttttttgtggctcaaatttcctaaatcattgattgtcaaattaagtctagaaccttcacccc |
33051800 |
T |
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| Q |
378 |
tttttgtttcgtcctggctagtctagttaatt-accagaaacaaagtttctaaatctcttgggggtaaccataaaaactccaagttatttgcacacttta |
476 |
Q |
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| T |
33051801 |
tttttgtttcgtcctggctagtctagttaatttaccagaaacaaagtttctaaatctcttgggggtaaccataaaaactccaagttatttgcacacttta |
33051900 |
T |
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| Q |
477 |
taccaaatattattccaaacttcgcacaaagaataaatgttgttccaattcttgattccaagagcacaaacacaagtagtagcattcat |
565 |
Q |
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| T |
33051901 |
tacaaaatattaatccaaacttcgcacaaagaataaatgttgttccaattcttgattccaagagcacaaacacaagtagtagcattcat |
33051989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 33051428 - 33051519
Alignment:
| Q |
36 |
accgcaagtcgaatatatttgcacatatatattttttgaaaaaacaaagcaaaatttcaattagaagagaatataaagggtactagacctac |
127 |
Q |
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| T |
33051428 |
accgcaagtcgaatatatttgcacatatatattttttgaaacaacaaagcaaaattccaattagaagagaatataaagggtactagacctac |
33051519 |
T |
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