View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_high_9 (Length: 547)
Name: NF20194_high_9
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Complemental strand, 4845142 - 4844614
Alignment:
| Q |
8 |
tcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggattttgccatag |
107 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
4845142 |
tcagggttgtatgagttaataactagagggaacaaaaccaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggagtttggcatag |
4845043 |
T |
|
| Q |
108 |
ttgtgttgtgtgagaatagagtgaagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcacttatttattgttatatatacatt |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4845042 |
ttgtgttgtgtgagaatagagtgaagaagactagattttgtttttcttgttgattgttaggatgcttgaagttgcacttatttattgttatatatacatt |
4844943 |
T |
|
| Q |
208 |
acattaagaagtagaagggaaatttgtgtgaaaacaacactagactttgtcatgaaatagactactttgaaatggtcatatgaggtctttgggagactag |
307 |
Q |
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| T |
4844942 |
agattgagaagtagaagggaaatttgtgtgaaaacaacactagactttgtcatgaaatagactactttgaaatggtcatatgaggtctttgggagactag |
4844843 |
T |
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| Q |
308 |
tatgaaaccgactactttgaaatggtcggaagatatcatatttgcaatagatgatttccaatggatttggagcgttattgaacctgagctgatttctctt |
407 |
Q |
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| T |
4844842 |
tatgaaaccgactactttgaaatggtcggaagatatcatatttgcaatagatgatttccaatggatttggagcgttattgaacctgagctgatttctctt |
4844743 |
T |
|
| Q |
408 |
cgaactttgtgtcatgcatatcggtgacgagtgctataccttgtgtcatgcatcaactttgtgccagacccttgcttagctcaagctttggttcaagcaa |
507 |
Q |
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| T |
4844742 |
cgaactttgtgtcatgcatatcggtgacgagtgctataccttgtgtcatgcatcaactttgtgccagacccttgcttagctcaagctttggttcaagcaa |
4844643 |
T |
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| Q |
508 |
atg-----aaatcaaggttacctaaattc |
531 |
Q |
| |
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| T |
4844642 |
atgaaatgaaatcaaggttacctaaattc |
4844614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 4711214 - 4710940
Alignment:
| Q |
8 |
tcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggattttgccatag |
107 |
Q |
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|||||||||||||||||| ||||||| ||||||| | |||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
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| T |
4711214 |
tcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggagtttgccatag |
4711115 |
T |
|
| Q |
108 |
ttgtgttgtgtgagaatagagtgaagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcacttatttattgttatatatacatt |
207 |
Q |
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|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4711114 |
ttatgt-----gaaaatagagtgaagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcatttatttattgttatatatacatt |
4711020 |
T |
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| Q |
208 |
acattaagaagtagaagggaaatttgtgtgaaaacaacactaga-ctttgtcatgaaatagactactttgaaatggtcata |
287 |
Q |
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| T |
4711019 |
acattaagaagtagaagggaaatttgtgtg-aaacaacactagagacttgtcatgaaatagactactttgaaatggtcata |
4710940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 399 - 531
Target Start/End: Complemental strand, 4709983 - 4709852
Alignment:
| Q |
399 |
atttctcttcgaactttgtgtcatgcatatcggtgacgagtgctataccttgtgtcatgcatcaactttgtgccagacccttgcttagctcaagctttgg |
498 |
Q |
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| T |
4709983 |
atttctctttgaactttgtgtcatgcatatcggtgactggtgctataccttgtgtcatgcatcaactttatggaag-gccttgcttagctcatgctttag |
4709885 |
T |
|
| Q |
499 |
ttcaagcaaatgaaatcaaggttacctaaattc |
531 |
Q |
| |
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||||||||||||||||||| |||| |||||||| |
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| T |
4709884 |
ttcaagcaaatgaaatcaaagttatctaaattc |
4709852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 4696309 - 4696210
Alignment:
| Q |
10 |
agggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggattttgccatagtt |
109 |
Q |
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||||| ||||||| || ||||||| ||||||| | |||| || |||||| ||| |||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
4696309 |
agggtcgtatgaggtagcaactagagggaacaatagcaaaatgagagatagcaggatgattttagtgtgaaattttttgtttctggagtttgccatagtt |
4696210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 4864940 - 4865079
Alignment:
| Q |
55 |
agatagtagggtgattttagtgtgaaattttttgtttatggattttgccatagttgtgttgtgtgagaatagagtgaagaagagtagattttgtttttct |
154 |
Q |
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||||||||||||||||||||||| || ||| |||||||| || ||||||||| |||||||||||| || ||||||||| | |||| |||| || | |
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| T |
4864940 |
agatagtagggtgattttagtgtaaagtttcttgtttatcgagtttgccata-----gttgtgtgagaagagggtgaagaaggattgattatgttgttgt |
4865034 |
T |
|
| Q |
155 |
tgttgagtgttaggatgcttgaagttgcacttatttattgttata |
199 |
Q |
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||||||| || | ||||| |||||| || ||||||||| ||||| |
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| T |
4865035 |
tgttgaggtttggaatgctagaagttacatttatttattcttata |
4865079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 4673721 - 4673776
Alignment:
| Q |
58 |
tagtagggtgattttagtgtgaaattttttgtttatggattttgccatagttgtgt |
113 |
Q |
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| T |
4673721 |
tagtagggtgatttttgtgtaattttttttgtttatggagtttgccatagctgtgt |
4673776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 4654461 - 4654559
Alignment:
| Q |
8 |
tcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggattttgccata |
106 |
Q |
| |
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|||||||||||||||| | || |||| ||||||| | |||| ||| |||||||| | | ||||| |||| || |||||||||||||| ||||||||| |
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| T |
4654461 |
tcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaatgtttttgtttatggagtttgccata |
4654559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 4637819 - 4637924
Alignment:
| Q |
8 |
tcagggttgtatgagttaataactagatggaacaaaaacaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggattttgccatag |
107 |
Q |
| |
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|||||||||||||||||| ||||| | |||| | | |||| ||| ||||||| | ||||||| |||| || |||||||||||||| |||||||||| |
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| T |
4637819 |
tcagggttgtatgagttagcaactaaagggaaaagtagcaaaaagagggatagtatgctgatttttgtgtaaatgtttttgtttatggagtttgccatag |
4637918 |
T |
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| Q |
108 |
ttgtgt |
113 |
Q |
| |
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||||| |
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| T |
4637919 |
ctgtgt |
4637924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 40409777 - 40409809
Alignment:
| Q |
438 |
gtgctataccttgtgtcatgcatcaactttgtg |
470 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
40409777 |
gtgctgtaccttgtgtcatgcatcaactttgtg |
40409809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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