View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_10 (Length: 539)
Name: NF20194_low_10
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 523
Target Start/End: Complemental strand, 12805427 - 12804919
Alignment:
| Q |
15 |
tcatattgtctctattttcaatgtaaatttggttaattcatgtgcccacttacctataagcatgtccaaagccacttattgaatatgcttcatgcatcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12805427 |
tcatattgtctctattttcaatgtaaatttggttaattcacgtgtccacttgcctataagcatgtccaaagccacttattgaatatgcttcatgcatcaa |
12805328 |
T |
|
| Q |
115 |
agatctctccctgcccgcatcagcgtcatacttcacatgcccaaaaatgtcggtttggttcgtcggtgaaccatattgtactaaaagatggtttgttttg |
214 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12805327 |
agatcactccctgcccgcatcagcctcatacttcacatgcccaaaaatgtcggtttggttcgtccgtgaaccatattgtactaaaagatggtttgttttg |
12805228 |
T |
|
| Q |
215 |
atagctttagtaaaatcttatacaactttaagtattagcagctatctctacaaatcaacatgagtcaatttagcatgttttgtcgtcactcacacannnn |
314 |
Q |
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| T |
12805227 |
acagctttagtaaaatcttatacaactttaagtattagcagttatctctacaaatcaacataagtcaatttagtatgttttgtcgtcactcacacatttt |
12805128 |
T |
|
| Q |
315 |
nnngaacttacccaacattcaattcattccaaaattgatcaatgtaatgcacacttgcgaagttcttaccatatgatatatcgggaaaaagatgcaaatt |
414 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12805127 |
tttgaacttacccaacattcaactcattccaaaattgatcaatgtaatgcacacttgcgaagttcttacgatatgatatatcgggaaaaagatgcaaatt |
12805028 |
T |
|
| Q |
415 |
gtttgtaaaggtagctccggtcattgtctttaagtcttcctttaaccgtacattctcatacgtgcacaatctcacaatccctctcatttcaatttgaatt |
514 |
Q |
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| T |
12805027 |
gtttgtaaaggtagctccggtcattgtctttaagtcttcttttaaccgtacattctcatacgtgcacaatctcacaatccctctcatttcaatttgaatt |
12804928 |
T |
|
| Q |
515 |
ggcttcatt |
523 |
Q |
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| T |
12804927 |
ggcttcatt |
12804919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 2489754 - 2489687
Alignment:
| Q |
445 |
taagtcttcctttaaccgtacattctcatacgtgcacaatctcacaatccctctcatttcaatttgaa |
512 |
Q |
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|||||||| ||| |||| |||||||||||| |||||||||||| |||| |||||||||||| |||| |
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| T |
2489754 |
taagtcttacttcaaccacacattctcatacatgcacaatctcatgatccttctcatttcaatgtgaa |
2489687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 3656179 - 3656114
Alignment:
| Q |
92 |
attgaatatgcttcatgcatcaaagatctctccctgcccgcatcagcgtcatacttcacatgccca |
157 |
Q |
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|||||| |||||||||||||||| ||| |||| ||||| ||||||||||| || |||||||||| |
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| T |
3656179 |
attgaacatgcttcatgcatcaacaatcactccatgccctcatcagcgtcaagctccacatgccca |
3656114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 507
Target Start/End: Complemental strand, 42317687 - 42317631
Alignment:
| Q |
451 |
ttcctttaaccgtacattctcatacgtgcacaatctcacaatccctctcatttcaat |
507 |
Q |
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||||||||||||| || |||||||| | |||| ||||| || ||||||||||||||| |
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| T |
42317687 |
ttcctttaaccgtgcaatctcatacatacacagtctcataacccctctcatttcaat |
42317631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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