View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_14 (Length: 446)
Name: NF20194_low_14
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 31246658 - 31246848
Alignment:
| Q |
237 |
acaatattattacttaattttattgtaagatccttatttcgtgcttaagggtacaagtaacaatatttccctttcttttttcataagttgctttcagctt |
336 |
Q |
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| T |
31246658 |
acaatattattatttaattttattgtaagatccttatttcgtgcttaagggtacaagtaacaatatttccctttcttttttcataagttgctttcagctt |
31246757 |
T |
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| Q |
337 |
gatatatttgtcttccttgtggtacaatgacacttggatgattaacggtttagtcaaacaagttgtttctaggaaaggttgttgaatacgt |
427 |
Q |
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| T |
31246758 |
gatatatttgtcttccttgtggtacaatgacacttggatgattaacggtttagtcaaacaagttgtttctaggaaaggttgttgaatacgt |
31246848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 31237289 - 31237480
Alignment:
| Q |
237 |
acaatattattacttaattttattgtaagatccttatttcgtgcttaagggtacaagtaacaatatttccctttcttttttcat-aagttgctttcagct |
335 |
Q |
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| T |
31237289 |
acaatattattatttaattttattgtaagatccttattttgtgcttaagggcacaagtaacaatatttccctttcttttttcattaagttgctttcagct |
31237388 |
T |
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| Q |
336 |
tgatatatttgtcttccttgtggtacaatgacacttggatgattaacggtttagtcaaacaagttgtttctaggaaaggttgttgaatacgt |
427 |
Q |
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| T |
31237389 |
tgatatatttgtcttctttgtggtactttgacacttggatgattaacggttgagtcaaacaagttgtttctaggaaagattgttgaatacgt |
31237480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 31246425 - 31246595
Alignment:
| Q |
1 |
ttgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgaattctcttaaagtatatacacaaaacctttttctataaaatacggta |
100 |
Q |
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| T |
31246425 |
ttgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgttttctcttaaagtatatacacaaaacc-ttttctataaaatacggta |
31246523 |
T |
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| Q |
101 |
tgatcttgtttagtagcaaatcaaaggacannnnnnnnggatcttattaatttgtgctctaagagcacaaga |
172 |
Q |
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| T |
31246524 |
tgatcttgtttagtaacaaatcttaggacattttttttgggtcttattaatttgtgccctaagagcacaaga |
31246595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31237049 - 31237170
Alignment:
| Q |
1 |
ttgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgaattctcttaaagtatatacacaaaacctttttctataaaatacggta |
100 |
Q |
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| T |
31237049 |
ttgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgttttctcttaaagtatatacaccaaacctttttctatacaatacggta |
31237148 |
T |
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| Q |
101 |
tgatcttgtttagtagcaaatc |
122 |
Q |
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||||||| ||||||| |||||| |
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| T |
31237149 |
tgatcttttttagtaacaaatc |
31237170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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