View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_low_15 (Length: 433)

Name: NF20194_low_15
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20194_low_15
NF20194_low_15
[»] chr7 (10 HSPs)
chr7 (12-267)||(31076897-31077153)
chr7 (84-267)||(42417421-42417605)
chr7 (208-268)||(42418225-42418285)
chr7 (208-267)||(41406987-41407046)
chr7 (12-53)||(42417577-42417618)
chr7 (217-267)||(43103818-43103866)
chr7 (218-267)||(43104708-43104755)
chr7 (182-267)||(26782421-26782505)
chr7 (216-253)||(31077763-31077800)
chr7 (182-238)||(26786535-26786590)
[»] chr3 (7 HSPs)
chr3 (84-267)||(33565343-33565527)
chr3 (303-415)||(36380483-36380595)
chr3 (156-267)||(33336217-33336328)
chr3 (184-255)||(20518984-20519054)
chr3 (12-53)||(33565499-33565540)
chr3 (208-247)||(46889330-46889369)
chr3 (191-247)||(48058946-48059001)
[»] chr4 (8 HSPs)
chr4 (84-267)||(50185942-50186126)
chr4 (208-267)||(50185263-50185322)
chr4 (208-267)||(26341379-26341438)
chr4 (208-269)||(43460578-43460639)
chr4 (12-45)||(50185929-50185962)
chr4 (209-268)||(12920329-12920388)
chr4 (162-238)||(8139719-8139792)
chr4 (187-267)||(49574058-49574137)
[»] chr5 (16 HSPs)
chr5 (84-267)||(33573905-33574086)
chr5 (187-267)||(33574113-33574193)
chr5 (208-267)||(4084774-4084831)
chr5 (208-267)||(10951268-10951327)
chr5 (208-267)||(33573238-33573297)
chr5 (208-267)||(38486958-38487017)
chr5 (12-53)||(33573892-33573933)
chr5 (208-267)||(6051753-6051812)
chr5 (217-267)||(27365647-27365695)
chr5 (208-267)||(6052606-6052665)
chr5 (209-267)||(4909021-4909079)
chr5 (163-229)||(7726197-7726262)
chr5 (217-267)||(27364578-27364628)
chr5 (183-228)||(19119657-19119702)
chr5 (183-267)||(24872591-24872671)
chr5 (182-238)||(31021694-31021749)
[»] chr1 (8 HSPs)
chr1 (208-249)||(28764409-28764450)
chr1 (355-414)||(43139636-43139696)
chr1 (217-267)||(10920147-10920195)
chr1 (164-214)||(15418265-15418315)
chr1 (315-377)||(4309071-4309134)
chr1 (217-267)||(23818283-23818331)
chr1 (176-214)||(1469578-1469616)
chr1 (181-230)||(12644854-12644903)
[»] chr6 (5 HSPs)
chr6 (208-267)||(24063850-24063909)
chr6 (165-230)||(18969941-18970006)
chr6 (182-267)||(33485135-33485219)
chr6 (182-238)||(15654810-15654865)
chr6 (182-238)||(33489247-33489302)
[»] scaffold0159 (1 HSPs)
scaffold0159 (164-245)||(28162-28241)
[»] chr8 (3 HSPs)
chr8 (208-264)||(45107991-45108047)
chr8 (208-267)||(5780709-5780768)
chr8 (187-267)||(36228493-36228570)
[»] chr2 (1 HSPs)
chr2 (209-267)||(33739413-33739471)
[»] scaffold0019 (2 HSPs)
scaffold0019 (182-238)||(74648-74703)
scaffold0019 (182-238)||(102837-102892)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 31077153 - 31076897
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcagaaacctattgagagcagagggtcacgatgaatacagggagaaggaagccaacgtttca 111  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  31077153 agagaagccatggatacagggagaaggaagctgatgtttcagaaacctattgagaggagagggtcacgatgaatacaaggagaaggaagcaaacgtttca 31077054  T
Q  112 gtttcaactagggatagggaaa-gagagtatcatacgagtcatagaagtaacatttaatcacagccatctaatttaatctaagggtcattatttcaccct 210  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  31077053 gtttcagctggggatagggaaaagagagtatcatacgagtcatagaagtaacatttaatcacagccatctaatttaatctaagggtcattattttatcct 31076954  T
Q  211 ctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||    
T  31076953 ctcaccctctcattataaaatgtcatctcacttgatacaacccctatatatatatat 31076897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 84 - 267
Target Start/End: Complemental strand, 42417605 - 42417421
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcatacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42417605 atacagggagaaggaagccaacgtttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagccatctaa 42417506  T
Q  183 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  42417505 tttaatctaagggtcattatttcatcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatatat 42417421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 42418225 - 42418285
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatatg 268  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||||||    
T  42418225 cctctcaccctctcattttaaaatgtcctctcatttgatacatcccctatatatatatatg 42418285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 41406987 - 41407046
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||| | |||||||||||    
T  41406987 cctctcaccctctcattataaaatgtcatctcatttgatacatcccttttatatatatat 41407046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 42417618 - 42417577
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcag 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  42417618 agagaagccatggatacagggagaaggaagccaacgtttcag 42417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 43103866 - 43103818
Alignment:
Q  217 ctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||| ||||||||||  || |||||||||||||    
T  43103866 ctctcattataaaatgtcctctcacttgataca--ccttctatatatatat 43103818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 43104708 - 43104755
Alignment:
Q  218 tctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||| ||| ||||||||||  ||||||||||||||||    
T  43104708 tctcattataaaatgtcatctcacttgataca--ccctctatatatatat 43104755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 26782505 - 26782421
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||| | ||||  |||||  | |||||||||||    
T  26782505 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctcatttgagtcatcctatatatatatatat 26782421  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 31077763 - 31077800
Alignment:
Q  216 cctctcattataaaatgtcctcttacttgatacatccc 253  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  31077763 cctctcattataaaatgtcctctcatttgatacatccc 31077800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 26786535 - 26786590
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||    
T  26786535 atttaatcgaagggccattatttcaccctctca-tctctcattataaatagtcctct 26786590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 84 - 267
Target Start/End: Complemental strand, 33565527 - 33565343
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcatacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33565527 atacagggagaaggaagccaacgtttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagccatctaa 33565428  T
Q  183 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  33565427 tttaatctaagggtcattatttcatcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatatat 33565343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 303 - 415
Target Start/End: Complemental strand, 36380595 - 36380483
Alignment:
Q  303 aaagcaaaagggtatgagttttatacgtatgatatggcattgaaggaccatgttttagtagtgtataaaactcaatagattctagaaaaaatgaacattg 402  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  36380595 aaagcaaaagggtatgactttcatacgtatgatatggcatagaaggaccatgttttagtagtgtataaaactcaatagatcctagaaaaaatgaacactg 36380496  T
Q  403 aagatgctcttag 415  Q
    |||||||||||||    
T  36380495 aagatgctcttag 36380483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 33336328 - 33336217
Alignment:
Q  156 aagtaacatttaatcacagccatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccct 255  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||| ||  || |||||||||| ||||||||||||||||| | |||| |||||||||    
T  33336328 aagtaacatttaatcacaaccatctaatttaatctaagggttattatctcttccactcaccctcttattataaaatgtcctctcatttgaaacatcccct 33336229  T
Q  256 ctatatatatat 267  Q
     |||||||||||    
T  33336228 atatatatatat 33336217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 20518984 - 20519054
Alignment:
Q  184 ttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccct 255  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||    
T  20518984 ttaatctaagggccattatttcaccctctca-cctctcattataaaatctcctcttatttaatacatcccct 20519054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33565540 - 33565499
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcag 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  33565540 agagaagccatggatacagggagaaggaagccaacgtttcag 33565499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 46889369 - 46889330
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgata 247  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  46889369 cctctcaccctctcattataaaatgtcctctcatttgata 46889330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 48058946 - 48059001
Alignment:
Q  191 aagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgata 247  Q
    |||||| || |||| | ||||||||||||||||| |||||| |||||||||||||||    
T  48058946 aagggttatgatttaatcctctcaccctctcattttaaaat-tcctcttacttgata 48059001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 84 - 267
Target Start/End: Original strand, 50185942 - 50186126
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcatacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50185942 atacagggagaaggaagccaacatttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagccatctaa 50186041  T
Q  183 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||||    
T  50186042 tttaatctaagggtcattatttcatcctctcaccctctcattctaaaatgtcctctcacttgatacatcacctatatatatatat 50186126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 50185322 - 50185263
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||    
T  50185322 cctctcaccctctcattttaaaatgtcctctcatttgatacatcccctatatatatatat 50185263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 26341379 - 26341438
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||| |  |||||| | |||||||||||||| |||||||||||    
T  26341379 cctctcaccctctcattataacacttcctctcatttgatacatcccctatatatatatat 26341438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 43460639 - 43460578
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatatgt 269  Q
    ||||||||||||||||||||| |  |||||| | |||||||||||| | |||||||||||||    
T  43460639 cctctcaccctctcattataacacttcctctcatttgatacatcccatatatatatatatgt 43460578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 50185929 - 50185962
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaa 45  Q
    ||||||||||||||||||||||||||||||||||    
T  50185929 agagaagccatggatacagggagaaggaagccaa 50185962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 12920388 - 12920329
Alignment:
Q  209 ctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatatg 268  Q
    |||||||||||||||||||| | || |||| | |||||||||||| | ||||||||||||    
T  12920388 ctctcaccctctcattataagaagttctctcatttgatacatcccatatatatatatatg 12920329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 8139792 - 8139719
Alignment:
Q  162 catttaatcacagccatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    ||||||||| || ||||||||||  ||| ||||||| |||||| ||||||||| | |||||||||||||| ||||||    
T  8139792 catttaatcccaaccatctaatt--atccaagggtctttatttaaccctctcatc-tctcattataaaatatcctct 8139719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 49574137 - 49574058
Alignment:
Q  187 atctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||  | |||| ||||||||||| ||||||| ||| |  |||||| ||||||||||| |||| |||||||||||    
T  49574137 atctaagggttgtgatttaaccctctcacc-tctcattttaagaactcctctcacttgatacattccctatatatatatat 49574058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 84 - 267
Target Start/End: Original strand, 33573905 - 33574086
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcatacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33573905 atacagggagaaggaagccaacgtttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagccatctaa 33574004  T
Q  183 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||  || |||| |||||||||||    
T  33574005 tttaatctaagggtcattatttcatcctctcaccctctcattttaaaa-gtcctctcacttgat--atgccctatatatatatat 33574086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 33574193 - 33574113
Alignment:
Q  187 atctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||| ||| || |||| | ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  33574193 atctaaaggttataatttaatcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatatat 33574113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 4084774 - 4084831
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||    
T  4084774 cctctcaccctctcattataaaatgtcctctcacttgataca--ccctatatatatatat 4084831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 10951327 - 10951268
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||||||| ||||| |||||||||| || || |||||||||||    
T  10951327 cctctcaccctctcattataaaatgccctctcacttgatacaccctctatatatatatat 10951268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 33573297 - 33573238
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||||| |||||||||||    
T  33573297 cctctcagcctctcattttaaaatgtcctctcatttgatacatcccctatatatatatat 33573238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 38487017 - 38486958
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||||  || |||| |||||||||||||||| |||||||||||    
T  38487017 cctctcaccctctcattataaatagtgctctcacttgatacatcccctatatatatatat 38486958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 33573892 - 33573933
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcag 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  33573892 agagaagccatggatacagggagaaggaagccaacgtttcag 33573933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 6051812 - 6051753
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||| |  |||||| | |||||||||||||| |||||||||||    
T  6051812 cctctcaccctctcattataacacttcctctcatttgatacatcccctatatatatatat 6051753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 27365647 - 27365695
Alignment:
Q  217 ctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  27365647 ctctcattataaaatgtcctctcacttgataca--ccctctatatatatat 27365695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 6052606 - 6052665
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||| |||||||||||| |  |||||| | |||||||||||||| |||||||||||    
T  6052606 cctctcactctctcattataacacttcctctcatttgatacatcccctatatatatatat 6052665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 4909021 - 4909079
Alignment:
Q  209 ctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||| |||| || | |||| | |||||||| |||||||||||||||||    
T  4909021 ctctcaccctctcataataagatatgctctcatttgatacaccccctctatatatatat 4909079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 7726197 - 7726262
Alignment:
Q  163 atttaatcacagccatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaa 229  Q
    ||||||| ||| |||| | |||||||| ||||||||||||||||||| ||||  |||||||||||||    
T  7726197 atttaattacaaccatttgatttaatccaagggtcattatttcacccactca-tctctcattataaa 7726262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 27364628 - 27364578
Alignment:
Q  217 ctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||| |||| |||||||||| || || |||||||||||    
T  27364628 ctctcattataaaatgtactctcacttgatacaccctctatatatatatat 27364578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 19119657 - 19119702
Alignment:
Q  183 tttaatctaagggtcattatttcaccctctcaccctctcattataa 228  Q
    ||||||||||||||||||||||   ||||||| |||||||||||||    
T  19119657 tttaatctaagggtcattatttattcctctcatcctctcattataa 19119702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 24872591 - 24872671
Alignment:
Q  183 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||| || |||| |  |||||||| |||||||||||| |||||||| | ||||||||  ||||||||||||||||    
T  24872591 tttaatctaagggttatcatttgatgctctcacc-tctcattataaa-tgtcctctcatttgataca--ccctctatatatatat 24872671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 31021694 - 31021749
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||    
T  31021694 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctct 31021749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 28764409 - 28764450
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgataca 249  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  28764409 cctctcaccctctcattataaaatgtcctctcacttgataca 28764450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 43139696 - 43139636
Alignment:
Q  355 ttttagtagtgtataaaactcaa-tagattctagaaaaaatgaacattgaagatgctctta 414  Q
    |||||||||||||| |||||||| ||||||| | ||||||||| |||||||||||||||||    
T  43139696 ttttagtagtgtatgaaactcaaatagattccataaaaaatgatcattgaagatgctctta 43139636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 10920147 - 10920195
Alignment:
Q  217 ctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  10920147 ctctcattataaaatgtcctctcacttgataca--ccctctatatatatat 10920195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 15418315 - 15418265
Alignment:
Q  164 tttaatcacagccatctaatttaatctaagggtcattatttcaccctctca 214  Q
    |||||||||||| |||||| ||||| ||| |||||||||||||||||||||    
T  15418315 tttaatcacagcgatctaagttaatttaatggtcattatttcaccctctca 15418265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 4309071 - 4309134
Alignment:
Q  315 tatgagttttatacgtatgatatggcattgaaggacca-tgttttagtagtgtataaaactcaa 377  Q
    ||||||||| ||| ||||||| |||||||||||||||| ||||||||| |||||| ||| ||||    
T  4309071 tatgagtttcataagtatgatgtggcattgaaggaccattgttttagttgtgtatgaaattcaa 4309134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 23818283 - 23818331
Alignment:
Q  217 ctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||| |||||| ||||||||||  ||||||||||||||||    
T  23818283 ctctcattataaaatatcctctcacttgataca--ccctctatatatatat 23818331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 1469578 - 1469616
Alignment:
Q  176 catctaatttaatctaagggtcattatttcaccctctca 214  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  1469578 catctcatttaatccaagggtcattatttcaccctctca 1469616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 12644854 - 12644903
Alignment:
Q  181 aatttaatctaagggtcattatttcaccctctcaccctctcattataaaa 230  Q
    ||||||||||||||||  |||||| | ||||||||||||||||| |||||    
T  12644854 aatttaatctaagggttcttatttaatcctctcaccctctcattttaaaa 12644903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 24063909 - 24063850
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||||||||||||| |  |||||| | |||||||||||||| |||||||||||    
T  24063909 cctctcaccctctcattataacacttcctctcatttgatacatcccctatatatatatat 24063850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 18970006 - 18969941
Alignment:
Q  165 ttaatcacagccatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaa 230  Q
    ||||||||| ||||  ||||||||||||||||  |||||| | ||||||| ||||||||| |||||    
T  18970006 ttaatcacaaccattaaatttaatctaagggttcttatttaatcctctcatcctctcattttaaaa 18969941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 33485219 - 33485135
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||| |  |||  ||||| || |||||||||||    
T  33485219 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctcatctgagtcatcctctatatatatatat 33485135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 15654865 - 15654810
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||    
T  15654865 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctct 15654810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 33489247 - 33489302
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||    
T  33489247 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctct 33489302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 28241 - 28162
Alignment:
Q  164 tttaatcacagccatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttga 245  Q
    ||||||||||||||||||| | ||||||| || || | ||||| ||||||||||||||||| ||||| ||||||||| ||||    
T  28241 tttaatcacagccatctaact-aatctaatggccactgtttcatcctctcaccctctcatt-taaaaagtcctcttatttga 28162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 45107991 - 45108047
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatata 264  Q
    ||||||||||||||||||||||  || |||| |||||||||||||| | ||||||||    
T  45107991 cctctcaccctctcattataaatagtactctcacttgatacatcccatatatatata 45108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 5780709 - 5780768
Alignment:
Q  208 cctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||| |||||||  |||| ||||||||| | |||||||||||||| |||||||||||    
T  5780709 cctctcatcctctcacaataacatgtcctctcatttgatacatcccctatatatatatat 5780768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 36228570 - 36228493
Alignment:
Q  187 atctaagggtcattatttcaccctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    ||||||||||  | |||||||||||||| | ||||||| ||||| |||||||||||||||  || |||| |||||||||||    
T  36228570 atctaagggttgtgatttcaccctctcatc-tctcattttaaaaggtcctcttacttgat--atgccctatatatatatat 36228493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 33739413 - 33739471
Alignment:
Q  209 ctctcaccctctcattataaaatgtcctcttacttgatacatcccctctatatatatat 267  Q
    |||||||||||||||||||| | ||||||| | |||||||||  ||| |||||||||||    
T  33739413 ctctcaccctctcattataagaagtcctctcatttgatacatttcctatatatatatat 33739471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 74703 - 74648
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||    
T  74703 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctct 74648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 102837 - 102892
Alignment:
Q  182 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 238  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||    
T  102837 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctct 102892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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