View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_16 (Length: 419)
Name: NF20194_low_16
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Original strand, 43879993 - 43880400
Alignment:
| Q |
12 |
cataggtgaaagtgatttggttgtggtaaatccctccaaagaagggaaagatgtacatcgatcatttaagttcaacaagattttcggccctgccgcaact |
111 |
Q |
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| T |
43879993 |
cataggtgaaagtgatttggttgtggtaaatccctccaaagaagggaaagatgtacatcgatcatttaagttcaacaagattttcggccctgccgcaact |
43880092 |
T |
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| Q |
112 |
caaggtttatttatatattctattccatttttgagattaggctatggagaagtattccttatatccagagatgaaaattttgcatcattattcatgtgta |
211 |
Q |
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| T |
43880093 |
caaggtttatttatatattctattccatttttgagattaggctatggagaagtattccttatatccagagatgaaaattttgcatcattattcatgtgta |
43880192 |
T |
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| Q |
212 |
tcgatattacagtttttacttagttttagttgtaatgtttatattctgacgttgtcccgtgattctactttgaatgatgcacaggagatgtatacgctga |
311 |
Q |
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| T |
43880193 |
tcgatattacagtttttacttagttttagttgtaatgtttatattctgacgttgtcccgtgattctactttgaatgatgcacaggagatgtatacgctga |
43880292 |
T |
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| Q |
312 |
cattcaaccttttgtaagatcggtactcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggtgtaaacc |
411 |
Q |
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| T |
43880293 |
cattcaaccttttgtaagatcggtactcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggtataaacc |
43880392 |
T |
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| Q |
412 |
ctcttgac |
419 |
Q |
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| T |
43880393 |
ctcttgac |
43880400 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 404
Target Start/End: Complemental strand, 31647691 - 31647607
Alignment:
| Q |
320 |
cttttgtaagatcggtactcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggt |
404 |
Q |
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| T |
31647691 |
cttttataagatcagtacttgatggttataatgtttgtatatttgcttatggtcagacaggttcaggaaaaacttacacaatggt |
31647607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 44588312 - 44588248
Alignment:
| Q |
340 |
gatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggt |
404 |
Q |
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| T |
44588312 |
gatggctataatgtttgcatatttgcatatggccaaacaggatctggaaaaacttacacgatggt |
44588248 |
T |
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