View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_17 (Length: 411)
Name: NF20194_low_17
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 36002894 - 36002511
Alignment:
| Q |
8 |
gagaagaatgactttagaagctcacctagactacatctatacacaacatcataagccttgaaatcataaatattttcatgcttcaaagagagaaatatta |
107 |
Q |
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| T |
36002894 |
gagaagaatgactttagaagctcacctagactacatctatacacaacatcataagccttgaaatcataaatattttcatgcttcaaagagagaaatatta |
36002795 |
T |
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| Q |
108 |
tcttcttaatttagctttagacaatataaagctaggaaatttggtatccactgtttgacgcaatgtaactgctagaaagcatataaagtttaaactaagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36002794 |
tcttcttaatttagctttagacaatataaagctaggaaatttggtatccactgtttgacgtaatgtaactgctagaaagcatataaagtttaaactaagt |
36002695 |
T |
|
| Q |
208 |
taggacttttattagctatagataagtagtatatgtgataattataataagtttatcaaactctacaataatgctcagtaagatcaacagaaagtgggtg |
307 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36002694 |
tagaacttttattagctatagataagtagtatatgtgataattataataagtttatcaaactctacaataatgctcagtaagatcaacagaaagtgggtg |
36002595 |
T |
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| Q |
308 |
ataagagaaattttccaaaataaaaaggagaaaatacgaatatttggggactaaccaaaactcaaagtaaacaatcaagggcat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
36002594 |
ataagagaaattttccaaaataaaaaggagaaaatacaaatattgggggactaaccaaaactcaaagtaaacaatcaaaggcat |
36002511 |
T |
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