View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_18 (Length: 407)
Name: NF20194_low_18
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 48091038 - 48091420
Alignment:
| Q |
17 |
taatactacagagtgcaaaagagggtactttaacatgcatcttactatatatgcaatgtatatatgcatgacagtccacaccttaaattttattttccaa |
116 |
Q |
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| T |
48091038 |
taatactacagagtgcaaaagagggtactttaacatgcatcttactatatatgcaatgtat----gcatgacagtccacaccttaaattttattttccaa |
48091133 |
T |
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| Q |
117 |
tgtatg----aataaaatgcaactactacct-----------tttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatat |
201 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091134 |
tgtatgtatgaataaaatgcaactactacctgtgtactaccttttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatat |
48091233 |
T |
|
| Q |
202 |
taatatctctgacacactata--tatatagcacctttcctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatgg |
299 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091234 |
taatatctctgacacactatatatatatagcacctttcctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatgg |
48091333 |
T |
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| Q |
300 |
ctgccactatggttttgcagtcttattacatcaatgtagtgatcatattgatggtggcattgacgagttgtttcaaaggcacagtgg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091334 |
ctgccactatggttttgcagtcttattacatcaatgtagtgatcatattgatggtggcattgacgagttgtttcaaaggcacagtgg |
48091420 |
T |
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