View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_2 (Length: 797)
Name: NF20194_low_2
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Original strand, 32158166 - 32158724
Alignment:
| Q |
18 |
gaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaagca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158166 |
gaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaagca |
32158265 |
T |
|
| Q |
118 |
tccacctgtgtaataacattagcattattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158266 |
tccacctgtgtaataacattagcattattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactgg |
32158365 |
T |
|
| Q |
218 |
tttctctgacattggcatattatatgaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagtttttatttcataatatgaacacaacc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32158366 |
tttctctgacattggcatattatatgaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagttgttatttcataatatgaacacaacc |
32158465 |
T |
|
| Q |
318 |
tactccaacatgttccaaagtatatacagacactgatgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158466 |
tactccaacatgttccaaagtatatacagacactgatgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttgg |
32158565 |
T |
|
| Q |
418 |
caataacattgccggtagttttggacatgggcacacattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158566 |
caataacattgccggtagttttggacatgggcacacattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgt |
32158665 |
T |
|
| Q |
518 |
gggagtaaatatggttaaaaggtgtgttatttgaacgatcatttacatgacaacttacg |
576 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32158666 |
gggagtaaatatggttaaaaggtgtgttatttgaacgatcatttgcatgacaacttacg |
32158724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 659 - 787
Target Start/End: Original strand, 32158807 - 32158935
Alignment:
| Q |
659 |
ttatcacaaattaaatgtacaaatattatttctctatttttaacttaaacaagggaattatttatttgtttgacttatgagtacagtagtgtgccctacc |
758 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32158807 |
ttatcacagattaaatgtacaaatattatttctctacttttaacttaaacaagggaattatttatttgtttgacttatgagtacagaagtgtgccctacc |
32158906 |
T |
|
| Q |
759 |
ctctggctttgcctcaagctctctgctcc |
787 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
32158907 |
ctctggctttgcctcaagctctctgctcc |
32158935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 27325197 - 27325273
Alignment:
| Q |
22 |
tcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
98 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || |||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
27325197 |
tcagcagctaatgcttgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaa |
27325273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 27358250 - 27358142
Alignment:
| Q |
18 |
gaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaagca |
117 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||| || |||| ||||| ||||| |||||||| || ||||| ||||| || |||||| || ||| |
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| T |
27358250 |
gaactcagaagctaatgcttgcaaccattcatcatctttatcttcttctaataaacatactgctgctggattccctttgaatgctgtctcagtgaatgca |
27358151 |
T |
|
| Q |
118 |
tccacctgt |
126 |
Q |
| |
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||||||||| |
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|
| T |
27358150 |
tccacctgt |
27358142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 27350227 - 27350303
Alignment:
| Q |
22 |
tcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
98 |
Q |
| |
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||||| |||||| |||||||||||||||||| || |||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
27350227 |
tcagcagctaatgattgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaa |
27350303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 44288312 - 44288205
Alignment:
| Q |
18 |
gaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaagca |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
44288312 |
gaactcagctgctaatgcttgcaaccattcatcatccctctcttcttctaacaaacacactgctgcagggtttcccttgaacgctgactcagtgaaagca |
44288213 |
T |
|
| Q |
118 |
tccacctg |
125 |
Q |
| |
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|||||||| |
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|
| T |
44288212 |
tccacctg |
44288205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 701
Target Start/End: Complemental strand, 6884943 - 6884901
Alignment:
| Q |
659 |
ttatcacaaattaaatgtacaaatattatttctctatttttaa |
701 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
6884943 |
ttatcacaaattagttgtacaaatatcatttctctatttttaa |
6884901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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