View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_low_26 (Length: 363)

Name: NF20194_low_26
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20194_low_26
NF20194_low_26
[»] chr2 (8 HSPs)
chr2 (11-229)||(18996002-18996220)
chr2 (305-347)||(18996296-18996338)
chr2 (11-96)||(28774996-28775080)
chr2 (10-83)||(20511074-20511147)
chr2 (14-94)||(24282380-24282459)
chr2 (21-96)||(2605-2680)
chr2 (11-96)||(34896075-34896160)
chr2 (32-96)||(31145487-31145551)
[»] chr8 (11 HSPs)
chr8 (12-97)||(20496144-20496229)
chr8 (11-96)||(23539649-23539734)
chr8 (11-96)||(18829972-18830057)
chr8 (11-88)||(24625625-24625702)
chr8 (16-96)||(23543196-23543276)
chr8 (11-96)||(25281816-25281901)
chr8 (32-96)||(22982144-22982208)
chr8 (34-98)||(15929665-15929729)
chr8 (11-96)||(15887061-15887146)
chr8 (11-83)||(16090628-16090700)
chr8 (48-96)||(25264020-25264068)
[»] scaffold0228 (3 HSPs)
scaffold0228 (11-94)||(6310-6393)
scaffold0228 (11-94)||(13892-13975)
scaffold0228 (11-94)||(23844-23927)
[»] chr4 (10 HSPs)
chr4 (11-96)||(28801559-28801643)
chr4 (14-93)||(9567328-9567407)
chr4 (32-96)||(23269244-23269308)
chr4 (46-97)||(17867860-17867911)
chr4 (16-96)||(16571928-16572008)
chr4 (11-71)||(21982718-21982778)
chr4 (12-66)||(6942864-6942920)
chr4 (11-96)||(12343401-12343485)
chr4 (61-98)||(28428586-28428623)
chr4 (60-96)||(7850817-7850853)
[»] chr3 (22 HSPs)
chr3 (14-96)||(11832264-11832346)
chr3 (11-96)||(5348143-5348228)
chr3 (11-96)||(11829219-11829304)
chr3 (14-84)||(12252083-12252153)
chr3 (14-96)||(20421651-20421733)
chr3 (19-96)||(19431735-19431811)
chr3 (11-92)||(19631286-19631367)
chr3 (11-88)||(19659144-19659221)
chr3 (15-71)||(4657451-4657507)
chr3 (23-96)||(11328292-11328366)
chr3 (19-96)||(10935238-10935315)
chr3 (45-97)||(16218269-16218321)
chr3 (22-86)||(30104251-30104315)
chr3 (17-96)||(8632616-8632694)
chr3 (11-96)||(25660874-25660960)
chr3 (11-96)||(25667279-25667365)
chr3 (11-96)||(25673684-25673770)
chr3 (32-96)||(25680109-25680174)
chr3 (32-96)||(25688413-25688478)
chr3 (21-96)||(13836469-13836545)
chr3 (35-83)||(15044581-15044629)
chr3 (19-71)||(15540731-15540783)
[»] chr1 (16 HSPs)
chr1 (11-96)||(20408750-20408835)
chr1 (17-86)||(21424036-21424105)
chr1 (15-96)||(21981571-21981652)
chr1 (20-97)||(22615880-22615957)
chr1 (11-83)||(23475187-23475259)
chr1 (11-96)||(21721005-21721090)
chr1 (23-99)||(21403163-21403239)
chr1 (11-68)||(18621240-18621297)
chr1 (32-97)||(19507725-19507790)
chr1 (15-96)||(21979353-21979434)
chr1 (32-96)||(37233215-37233279)
chr1 (17-97)||(9783402-9783481)
chr1 (48-96)||(16246358-16246406)
chr1 (20-96)||(20839178-20839253)
chr1 (20-94)||(25094674-25094747)
chr1 (21-100)||(49968502-49968582)
[»] scaffold0111 (1 HSPs)
scaffold0111 (11-98)||(25300-25387)
[»] chr5 (11 HSPs)
chr5 (11-96)||(17170333-17170418)
chr5 (10-99)||(22446789-22446878)
chr5 (11-99)||(24516772-24516860)
chr5 (18-88)||(31480307-31480376)
chr5 (11-76)||(19315712-19315777)
chr5 (11-84)||(22826935-22827008)
chr5 (12-96)||(17349204-17349288)
chr5 (32-84)||(18223374-18223426)
chr5 (11-95)||(26260396-26260480)
chr5 (11-94)||(19858741-19858824)
chr5 (21-96)||(23980839-23980915)
[»] chr7 (12 HSPs)
chr7 (11-98)||(13761012-13761099)
chr7 (11-88)||(11773287-11773364)
chr7 (19-97)||(18363080-18363158)
chr7 (11-96)||(5554-5638)
chr7 (42-99)||(3169545-3169602)
chr7 (23-96)||(13378317-13378390)
chr7 (20-71)||(18083283-18083334)
chr7 (61-99)||(14942817-14942855)
chr7 (61-99)||(15370410-15370448)
chr7 (19-97)||(17984175-17984252)
chr7 (12-96)||(12193167-12193250)
chr7 (32-96)||(16095608-16095672)
[»] chr6 (10 HSPs)
chr6 (15-70)||(14894553-14894608)
chr6 (11-96)||(14355788-14355873)
chr6 (11-96)||(14672257-14672342)
chr6 (11-96)||(18027819-18027904)
chr6 (11-98)||(16896802-16896889)
chr6 (11-84)||(18558151-18558224)
chr6 (32-71)||(10975681-10975720)
chr6 (9-82)||(9296621-9296693)
chr6 (32-96)||(22868250-22868315)
chr6 (20-96)||(22461478-22461554)
[»] scaffold0412 (1 HSPs)
scaffold0412 (14-99)||(3983-4068)
[»] scaffold0040 (1 HSPs)
scaffold0040 (11-99)||(42358-42446)
[»] scaffold0039 (1 HSPs)
scaffold0039 (11-96)||(8626-8711)
[»] scaffold0193 (1 HSPs)
scaffold0193 (32-96)||(19686-19750)
[»] scaffold0021 (2 HSPs)
scaffold0021 (32-96)||(16774-16838)
scaffold0021 (32-96)||(26305-26369)
[»] scaffold0205 (1 HSPs)
scaffold0205 (23-97)||(8757-8831)
[»] scaffold0035 (1 HSPs)
scaffold0035 (48-94)||(85575-85621)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-97)||(202193-202278)
[»] scaffold0009 (1 HSPs)
scaffold0009 (23-96)||(70276-70349)
[»] scaffold0050 (1 HSPs)
scaffold0050 (11-83)||(78001-78073)
[»] scaffold0018 (1 HSPs)
scaffold0018 (11-99)||(61857-61945)
[»] scaffold0964 (1 HSPs)
scaffold0964 (11-98)||(2928-3015)
[»] scaffold0020 (1 HSPs)
scaffold0020 (27-82)||(109093-109148)
[»] scaffold0331 (1 HSPs)
scaffold0331 (11-93)||(5163-5244)
[»] scaffold0315 (1 HSPs)
scaffold0315 (20-98)||(11857-11935)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-94)||(204088-204162)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-88)||(151223-151288)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 18996002 - 18996220
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaactcaagatctc 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  18996002 cacagagacaaataatcatatacaagcacaaataaacacacataataattaattaaaataactattgcgaaaatcgggttgttatacaactcaagacctc 18996101  T
Q  111 atcggcaagacaaaaagaaggggggagagagggtctccctgtcgtacacccctcttgcaagagaaaaaccaataccattaccattcaccaaaatagaaag 210  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18996102 atcggcaagacaaaaagaaggggggagagaggttctccctatcgtacacccctcttgcaagagaaaaaccaataccattaccattcaccaaaatagaaag 18996201  T
Q  211 acgggtcgagtgcagaata 229  Q
    |||||||||||||||||||    
T  18996202 acgggtcgagtgcagaata 18996220  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 18996296 - 18996338
Alignment:
Q  305 gtcacaaatgtctttctaatatcaaccttcatagctatattac 347  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  18996296 gtcacaaatgtctttctaatatcaaccttgatagctatattac 18996338  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 28774996 - 28775080
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||| ||||||||||||||| |||| |||| |||| ||||| |||||| |||||||||| | | ||||||||| ||||||||||||    
T  28774996 cacacagacaaataatcatatacaaacacatataatcacacgtaataaataattaaaat-attctagcgaaaaacgggttgttaca 28775080  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 20511074 - 20511147
Alignment:
Q  10 gcacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaa 83  Q
    |||| ||||||| |||||| | |||| |||| ||||||| ||||||||| |||||||||||| | |||||||||    
T  20511074 gcaccgagacaattaatcacatacaaacacatataaacatacataataaataattaaaataattctagcgaaaa 20511147  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 24282380 - 24282459
Alignment:
Q  14 agagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    |||||||| |||||||| ||||||||| |||| |||| ||||||| |||||||||||| | ||| ||||| ||||| ||||    
T  24282380 agagacaattaatcatatacaagcacatataa-cacaaataataaataattaaaataattttagtgaaaaacgggtagtta 24282459  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 2680 - 2605
Alignment:
Q  21 aataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||| | |||||||||||||||||||||  | || |||||||||||| | || | ||||||||| |||||||    
T  2680 aataatcacacacaagcacaaataaacacacaataaaaataattaaaataaatctaacaaaaatcgggctgttaca 2605  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 34896160 - 34896075
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||  ||||||||| | ||||||||| |||| | ||||||| |||||| |||||||| | || | |||| ||||||||||||    
T  34896160 cacagaggtaaataatcacacacaagcacacataaccgcacataacaattaaataaaataattctaactaaaaacgggttgttaca 34896075  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 31145551 - 31145487
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||| ||||||||||  | || |||||||||||| | || ||||||||||| |||||||    
T  31145551 acaagcacaattaaacacacaataaaaataattaaaataaatctaacgaaaatcgggctgttaca 31145487  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 20496229 - 20496144
Alignment:
Q  12 acagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  20496229 acagagacaattaatcatacacaagcacaaataaacacacataataattaattaaaataattctagcgaaaatcgggtcgttacac 20496144  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 23539734 - 23539649
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||| ||| ||||||||| | |||||| || ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  23539734 cacatagataaataatcacatacaagcgcatataaacacacataataaataattaaaataattatagcgaaaaacgggttgttaca 23539649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 18830057 - 18829972
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||| |||| | | ||||||||| ||||| ||||||||||| |||||||||||| ||||||||||| | ||||||||||    
T  18830057 cacagagacaattaattacatacaagcacatataaatacacataataaataattaaaataattatagcgaaaaacaggttgttaca 18829972  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 24625625 - 24625702
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcggg 88  Q
    |||||||||||||||||| | ||||||||| ||||||||| ||||||| ||| |||||||| | ||||||||||||||    
T  24625625 cacagagacaaataatcacatacaagcacatataaacacatataataaataaataaaataattctagcgaaaatcggg 24625702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 23543196 - 23543276
Alignment:
Q  16 agacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||| |||||||| | ||||||| ||||||||||||||||| |||||||||||| | |||| |||| ||||||||||||    
T  23543196 agacaattaatcatatataagcacatataaacacacataataaataattaaaataattctagcaaaaaacgggttgttaca 23543276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 25281816 - 25281901
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||| |||||| |||||| | ||||||||| ||||||||||||||||| ||||||||||||   ||| | ||| ||||||||||||    
T  25281816 cacaaagacaattaatcacatacaagcacatataaacacacataataaataattaaaataatactagtgcaaaacgggttgttaca 25281901  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 22982144 - 22982208
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| |||||||||||  | || |||||||||||| |||| |||||||||||||||||||    
T  22982144 acaagcacatataaacacacaataaaagtaattaaaataaatataacgaaaatcgggttgttaca 22982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 15929665 - 15929729
Alignment:
Q  34 aagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    ||||||| ||||||| | ||||||| ||| |||||||| | ||||||||| ||||||||||||||    
T  15929665 aagcacacataaacaaatataataaataaataaaataattttagcgaaaaacgggttgttacaca 15929729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 15887061 - 15887146
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||| |||||| | |||||  || |||||||| |||||||| |||||||||||| | |  |||||| | ||||||||||    
T  15887061 cacagagacaattaatcacatacaagtgcatataaacacgcataataaataattaaaataattctgacgaaaaacaggttgttaca 15887146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 16090700 - 16090628
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaa 83  Q
    |||| |||||| |||||| |  ||||| || ||| ||||||||||||| |||||||||||| | |||||||||    
T  16090700 cacaaagacaattaatcacacgcaagcgcatatagacacacataataaataattaaaataattctagcgaaaa 16090628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 25264020 - 25264068
Alignment:
Q  48 acacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||| |||||||||||| | || |||||| ||||||||||||    
T  25264020 acacataataaataattaaaataattctatcgaaaaacgggttgttaca 25264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 6393 - 6310
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  6393 cacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcgggttgtta 6310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 13975 - 13892
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  13975 cacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcgggttgtta 13892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 23927 - 23844
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  23927 cacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcgggttgtta 23844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 28801559 - 28801643
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||  |||||||    
T  28801559 cacagagacaaata-tcatatacaagcacatataaacacacataataattaattaaaataattctagcgaaaatcggactgttaca 28801643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 9567328 - 9567407
Alignment:
Q  14 agagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtt 93  Q
    ||||||||||||||| | |||  |||| |||| ||||||||||||||||||||||||| | ||| |||||||| ||||||    
T  9567328 agagacaaataatcacatacagacacatataaccacacataataattaattaaaataattctagtgaaaatcgagttgtt 9567407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 23269308 - 23269244
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| |||||||||||  | || |||||||||||| |||||||||||||||| |||||||    
T  23269308 acaagcacatataaacacacaataaaagtaattaaaataaatatagcgaaaatcgggctgttaca 23269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 17867860 - 17867911
Alignment:
Q  46 acacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||||||||||||  ||||||| | |||||||||||||||||||||||    
T  17867860 acacacataataattaacaaaaataaatctagcgaaaatcgggttgttacac 17867911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 16571928 - 16572008
Alignment:
Q  16 agacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||| |||||| | || || ||| ||||| ||||||||||| |||||||| |||  |||||||||| ||||||||||||    
T  16571928 agacaattaatcacatacgaggacatataaatacacataataaataattaaattaatcatagcgaaaaacgggttgttaca 16572008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 21982718 - 21982778
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataa 71  Q
    |||| ||| ||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||    
T  21982718 cacaaagataaataatcatatacaagcacatataagcacacataataaataaataaaataa 21982778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 6942920 - 6942864
Alignment:
Q  12 acagagacaaataatcatagaca--agcacaaataaacacacataataattaattaa 66  Q
    ||||||||||||||||| | |||  |||||| ||||||||||||||||| |||||||    
T  6942920 acagagacaaataatcacacacacaagcacatataaacacacataataaataattaa 6942864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 12343485 - 12343401
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||| |||||| | |||  |||| ||||||||||  ||||| |||| ||||||| | ||| ||||||||||||||||||    
T  12343485 cacagagacaattaatcacaaacagacacatataaacacaccgaataactaat-aaaataaatctagagaaaatcgggttgttaca 12343401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 28428586 - 28428623
Alignment:
Q  61 aattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  28428586 aattaaaataattatagcgaaaatcgggctgttacaca 28428623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 7850817 - 7850853
Alignment:
Q  60 taattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||||| |||| |||||||||||||||||||    
T  7850817 taattaaaataaatataacgaaaatcgggttgttaca 7850853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 11832346 - 11832264
Alignment:
Q  14 agagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||||||| | ||||||||| ||||||| |||||| ||||||||||||||| | ||||||||||||| ||||||||    
T  11832346 agagacaaataatcacatacaagcacatataaacatacataaaaattaattaaaataattctagcgaaaatcggattgttaca 11832264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 5348143 - 5348228
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||| |||||| |||||||| ||||| ||| ||||||||||||||||| |||||||||||| | |||||||||  |||||||||||    
T  5348143 cacatagacaattaatcatatacaagtacatataaacacacataataaataattaaaataattctagcgaaaaatgggttgttaca 5348228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 11829219 - 11829304
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||| ||||||||| | ||||| | | |||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  11829219 cacagagataaataatcacatacaagaatatataaacacacataataattaataaaagtaaatctagcgaaaatcgggttgttaca 11829304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 12252153 - 12252083
Alignment:
Q  14 agagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaat 84  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||||||||| | ||||||||||    
T  12252153 agagacaaataatcgcatacaagcacatatgaacacacataataattaattaaaataattctagcgaaaat 12252083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 20421651 - 20421733
Alignment:
Q  14 agagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||| ||||||   ||||||||| ||||||||| |||| ||||||||||||||| | || |||||||||| ||||||||    
T  20421651 agagacaattaatcacgtacaagcacatataaacacatataaaaattaattaaaataaatctaacgaaaatcggattgttaca 20421733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 19431735 - 19431811
Alignment:
Q  19 caaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||| | ||||||||| ||||||||| | || ||||||||||||||| | ||||||||| ||||||||||||    
T  19431735 caaataatcacatacaagcacatataaacacataaaa-aattaattaaaataaatctagcgaaaaacgggttgttaca 19431811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 19631367 - 19631286
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgt 92  Q
    ||||||||||| |||||| | ||||||||| ||||||||||||||||| ||| ||||| || | |||| |||| ||||||||    
T  19631367 cacagagacaattaatcacacacaagcacatataaacacacataataaataaataaaacaattctagcaaaaaacgggttgt 19631286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 19659221 - 19659144
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcggg 88  Q
    |||| |||||| |||||| | | ||||||| ||||||||||||||||| |||||||||||| | ||||||||| ||||    
T  19659221 cacatagacaattaatcacacaaaagcacatataaacacacataataaataattaaaataattctagcgaaaaacggg 19659144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 4657451 - 4657507
Alignment:
Q  15 gagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataa 71  Q
    ||||||| |||||| | ||||||||| ||||||||||||||||| ||||||||||||    
T  4657451 gagacaattaatcacatacaagcacatataaacacacataataaataattaaaataa 4657507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 11328366 - 11328292
Alignment:
Q  23 taatcatagacaagcacaaataaacacacataataattaattaaaa-taactatagcgaaaatcgggttgttaca 96  Q
    |||||| | |||||||||||||||||||||  | || ||||||||| ||| | ||||||||||||||||||||||    
T  11328366 taatcacatacaagcacaaataaacacacaataaaaataattaaaaataaatctagcgaaaatcgggttgttaca 11328292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 10935238 - 10935315
Alignment:
Q  19 caaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||| | | || |||| || ||||||| ||||||||||||||||||| | |||| |||| ||||||||||||    
T  10935238 caaataatcacacataaacacatattaacacacttaataattaattaaaataaatctagcaaaaaacgggttgttaca 10935315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 16218321 - 16218269
Alignment:
Q  45 aacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||||||||| |||||||||||  | ||||||||| |||||||||||||    
T  16218321 aacacacataataaataattaaaatatttctagcgaaaaacgggttgttacac 16218269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 30104315 - 30104251
Alignment:
Q  22 ataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcg 86  Q
    ||||||| | |||| |||| ||||||||||||||| |||||||||||||| | |||| |||||||    
T  30104315 ataatcacatacaaacacatataaacacacataatcattaattaaaataattctagcaaaaatcg 30104251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 8632616 - 8632694
Alignment:
Q  17 gacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||| |||||| | ||||| ||||||||||||| |||| ||  ||||||||||| | || |||||||||||||||||||    
T  8632616 gacaattaatcacacacaagtacaaataaacacatataaaaac-aattaaaataaatctaacgaaaatcgggttgttaca 8632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 25660960 - 25660874
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataatt-aattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| ||| ||| || | ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||||||| |||| |||||||    
T  25660960 cacagaggcaattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggctgttaca 25660874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 25667365 - 25667279
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataatt-aattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| ||| ||| || | ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||||||| |||| |||||||    
T  25667365 cacagaggcaattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggctgttaca 25667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 25673770 - 25673684
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataatt-aattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| ||| ||| || | ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||||||| |||| |||||||    
T  25673770 cacagaggcaattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggctgttaca 25673684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 25680174 - 25680109
Alignment:
Q  32 acaagcacaaataaacacacataataatt-aattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||||||| |||| |||||||    
T  25680174 acaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggctgttaca 25680109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 25688478 - 25688413
Alignment:
Q  32 acaagcacaaataaacacacataataatt-aattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| | ||||||||| |||| |||||||    
T  25688478 acaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggctgttaca 25688413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13836469 - 13836545
Alignment:
Q  21 aataatcatagacaagcacaaataaacacacataataattaattaaaataactatagc-gaaaatcgggttgttaca 96  Q
    |||||||| | ||||||||| |||||||||||  | || |||||||||||| | ||||  |||||||||||||||||    
T  13836469 aataatcacacacaagcacatataaacacacaataaaagtaattaaaataaatctagctaaaaatcgggttgttaca 13836545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 15044629 - 15044581
Alignment:
Q  35 agcacaaataaacacacataataattaattaaaataactatagcgaaaa 83  Q
    |||||| ||||||||| ||||||| |||||||||||| |||||| ||||    
T  15044629 agcacatataaacacatataataaataattaaaataattatagcaaaaa 15044581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 15540731 - 15540783
Alignment:
Q  19 caaataatcatagacaagcacaaataaacacacataataattaattaaaataa 71  Q
    |||||||||||| ||||  ||| | ||||||||||||||| ||||||||||||    
T  15540731 caaataatcatacacaaatacatacaaacacacataataaataattaaaataa 15540783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 20408750 - 20408835
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||| ||||||||||||| | ||||  ||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  20408750 cacatagacaaataatcacacacaaaaacatataaacacacataataagtaattaaaataattatagcgaaaaacgggttgttaca 20408835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 21424036 - 21424105
Alignment:
Q  17 gacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcg 86  Q
    |||| ||||||| | ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  21424036 gacagataatcacatacaagcacatataaacacacataataattaattaaaataattctagcgaaaatcg 21424105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 21981571 - 21981652
Alignment:
Q  15 gagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||||||| | ||||||||| || ||||||||||||||||||||||||||| | || | ||||| |||||||||||    
T  21981571 gagacaaataatcacatacaagcacatatgaacacacataataattaattaaaataattctaacaaaaattgggttgttaca 21981652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 22615880 - 22615957
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    ||||||||| | |||||| || ||||||||||||||||| ||||||||| | |||||||||||| |||| ||||||||    
T  22615880 aaataatcacatacaagcgcatataaacacacataataaataattaaaacatctatagcgaaaaacgggctgttacac 22615957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 23475259 - 23475187
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaa 83  Q
    ||||||||||| |||||| | ||||||||| |||| |||||||||||| |||||||||||| | |||||||||    
T  23475259 cacagagacaattaatcacatacaagcacatataatcacacataataaataattaaaataattctagcgaaaa 23475187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 21721005 - 21721090
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||| |||||| | || |||||| ||||||||||||||||| |||||||| | | | ||||||||| || |||||||||    
T  21721005 cacagagacaattaatcacatacgagcacatataaacacacataataaataattaaagtgattctagcgaaaaacgagttgttaca 21721090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 21403163 - 21403239
Alignment:
Q  23 taatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    |||||| | ||||| || |||||||||||||||||| |||||||||||| | |||  |||| |||||||||||||||    
T  21403163 taatcacatacaagaaccaataaacacacataataaataattaaaataattctagtaaaaaacgggttgttacacaa 21403239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 18621297 - 18621240
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaa 68  Q
    ||||||||||| |||||| | ||||||||| ||||||||||||||||| |||| ||||    
T  18621297 cacagagacaattaatcacatacaagcacatataaacacacataataaataataaaaa 18621240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 19507725 - 19507790
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||| |||||||||| |||| ||||||||||||||| | || |||||||| || ||||||||    
T  19507725 acaagcacgaataaacacatataagaattaattaaaataaatctaacgaaaatcaggctgttacac 19507790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 21979353 - 21979434
Alignment:
Q  15 gagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||||||| | ||||||||| || ||  ||||| ||| ||| ||||||||| | || | |||||||||||||||||    
T  21979353 gagacaaataatcacatacaagcacatatgaaagcacatcatatttagttaaaataattctaacaaaaatcgggttgttaca 21979434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 37233279 - 37233215
Alignment:
Q  32 acaagcacaaataaacacacataataattaatt-aaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||||||||||||| | ||| ||||| ||||||| |||| ||||||||||| |||||||    
T  37233279 acaagcacaaataaacacaca-attaaataattaaaaataattataacgaaaatcgggctgttaca 37233215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 9783481 - 9783402
Alignment:
Q  17 gacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    ||||| |||||| | ||||| ||||||||||||| |||| ||  ||||||||||| |||| ||||||| ||| ||||||||    
T  9783481 gacaattaatcacacacaagtacaaataaacacatataaaaac-aattaaaataaatataacgaaaattgggctgttacac 9783402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 16246358 - 16246406
Alignment:
Q  48 acacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||||||  || |||||||| | ||||||||||||||||||||||    
T  16246358 acacataataaacaaataaaataaatctagcgaaaatcgggttgttaca 16246406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 20839178 - 20839253
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| | ||||||||| | ||||||| || | ||| ||||||||||| | |||||||||||||| |||||||    
T  20839178 aaataatcacacacaagcacataaaaacacatattaaaat-aattaaaataattctagcgaaaatcgggctgttaca 20839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 25094674 - 25094747
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaatt-aaaataactatagcgaaaatcgggttgtta 94  Q
    ||||||||| | ||||||||||||||  ||||||| |||  |||| ||||||| |||||||||||||||| |||||    
T  25094674 aaataatcacacacaagcacaaataa--acacatattaaacaattaaaaataattatagcgaaaatcgggctgtta 25094747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 49968502 - 49968582
Alignment:
Q  21 aataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaa-tcgggttgttacacaac 100  Q
    |||||||| | |||| |||| ||||||||| |  | || |||||||||||| | ||||||||| |||||||||||||||||    
T  49968502 aataatcacacacaaacacatataaacacataataaaagtaattaaaataaatctagcgaaaaatcgggttgttacacaac 49968582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 25300 - 25387
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    |||| |||||| |||||| | ||||||||| ||||| ||||||||||| |||||||||||| | ||| ||||||||||||||||||||    
T  25300 cacacagacaattaatcacatacaagcacatataaaaacacataataaataattaaaataattctagtgaaaatcgggttgttacaca 25387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 17170333 - 17170418
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||||| |||||| | |||||| || ||||||||||||||||| |||||||||||| | ||| ||||| ||||||||||||    
T  17170333 cacagagacaattaatcacatacaagcgcatataaacacacataataaataattaaaataattgtagagaaaaacgggttgttaca 17170418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 22446789 - 22446878
Alignment:
Q  10 gcacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||| ||||||| ||||| | |||  |||| ||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||    
T  22446789 gcacatagacaaacaatcacatacacacacatataaacacacataataattaaataaaataattctagcgaaaatcgggctgttacacaa 22446878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 24516772 - 24516860
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||| |||||| | ||||||||| |||||| ||||||||||||||||||||||| | |||| |||||| || | ||||||||    
T  24516772 cacagagacaattaatcacatacaagcacatataaacgcacataataattaattaaaataattttagcaaaaatcaggctattacacaa 24516860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 31480307 - 31480376
Alignment:
Q  18 acaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcggg 88  Q
    ||||||||||||| ||||||||| ||||||||||||||| | |||||||||||| | ||||||||||||||    
T  31480307 acaaataatcatatacaagcacatataaacacacataatga-taattaaaataattctagcgaaaatcggg 31480376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19315777 - 19315712
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactata 76  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||| | |||||||||||| ||||    
T  19315777 cacagagacaaataatcacatacaagcacatataaacacacataatgaataattaaaataattata 19315712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 22827008 - 22826935
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaat 84  Q
    ||||||||| |||||||| | ||||| ||| ||| |||||||||||||||||||||||||| | |||| |||||    
T  22827008 cacagagacgaataatcacatacaagaacatatagacacacataataattaattaaaataattctagcaaaaat 22826935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 17349204 - 17349288
Alignment:
Q  12 acagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||| ||||||||||| | |||| |||  ||||||||| ||||||| ||| |||||||| | |||||||||| |||||||||||    
T  17349204 acagatacaaataatcacacacaaacacgtataaacacatataataaataaataaaataaatctagcgaaaattgggttgttaca 17349288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 18223426 - 18223374
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaat 84  Q
    ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  18223426 acaagcacatataaacacacataataaataattaaaataattctagcgaaaat 18223374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 26260480 - 26260396
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttac 95  Q
    |||||||  ||||||||| | ||||||| | | | |||||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  26260480 cacagaggtaaataatcacacacaagcatataaatacacacataataattaataaaaataaatctagcgaaaatcgagttgttac 26260396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 19858824 - 19858741
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    |||||||||||||||||| | |||||  || |||| |||||||||||| |||||| ||||| | || |||||| || |||||||    
T  19858824 cacagagacaaataatcacacacaagagcatataaccacacataataaataattagaataattctaacgaaaaacgcgttgtta 19858741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 23980915 - 23980839
Alignment:
Q  21 aataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcg-aaaatcgggttgttaca 96  Q
    |||||||| | |||| |||| |||||||||||  | || |||||||||||| ||||||| ||||||||| |||||||    
T  23980915 aataatcacacacaaacacatataaacacacaataaaagtaattaaaataaatatagcgaaaaatcgggctgttaca 23980839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 13761099 - 13761012
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    |||| ||||||||||||| | ||||| ||| ||||| ||||||||||| |||||||||||| |  |||||||| ||||||||||||||    
T  13761099 cacatagacaaataatcacatacaagtacatataaatacacataataaataattaaaataattccagcgaaaaacgggttgttacaca 13761012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 11773364 - 11773287
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcggg 88  Q
    |||||||||||||| ||| | ||||||||| ||||||||||||||||| |||||||||||| | || |||||| ||||    
T  11773364 cacagagacaaatagtcacacacaagcacatataaacacacataataaataattaaaataattttaacgaaaaacggg 11773287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 18363158 - 18363080
Alignment:
Q  19 caaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||||| | ||||||||| ||||||| | |||||||  || |||||||| |||||| ||||||||||||||||||    
T  18363158 caaataatcacatacaagcacatataaacatatataataaaaaaataaaataaatatagcaaaaatcgggttgttacac 18363080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 5554 - 5638
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| |||||||||| |  |||||  ||||||||||||||||||| ||| |||||||| | ||||| ||||||||||||||||    
T  5554 cacagaggcaaataatcacatgcaagcttaaataaacacacataataaataa-taaaataaatctagcgtaaatcgggttgttaca 5638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 3169602 - 3169545
Alignment:
Q  42 ataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||||||||| || ||||||||| | ||||||||| ||| |||||||||||    
T  3169602 ataaacacacataataaatatttaaaataattctagcgaaaaacggattgttacacaa 3169545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 13378317 - 13378390
Alignment:
Q  23 taatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||| | |||||||||||||||||||||  | || |||||||||||| | || ||||||||||| |||||||    
T  13378317 taatcacacacaagcacaaataaacacacaataaaaataattaaaataaatctaacgaaaatcgggctgttaca 13378390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 18083283 - 18083334
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaattaaaataa 71  Q
    ||||||||| | ||||||||| ||||||||| ||||||| ||||||||||||    
T  18083283 aaataatcacatacaagcacatataaacacatataataaataattaaaataa 18083334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 14942817 - 14942855
Alignment:
Q  61 aattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  14942817 aattaaaataaatatagcgaaaatcgggctgttacacaa 14942855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 15370410 - 15370448
Alignment:
Q  61 aattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  15370410 aattaaaataaatatagcgaaaatcgggctgttacacaa 15370448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 17984252 - 17984175
Alignment:
Q  19 caaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||||| | ||||| | ||||||||||| |||| ||  ||||||||||| | || ||||||||||||||||||||    
T  17984252 caaataatcacatacaagtataaataaacacatataaaaac-aattaaaataaatttaacgaaaatcgggttgttacac 17984175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 12193167 - 12193250
Alignment:
Q  12 acagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||| ||| |||||| | ||| ||||| ||||||||| | || ||||||||||||||| | || ||||||||||| |||||||    
T  12193167 acagaggcaattaatcacatacatgcacatataaacacataaaa-aattaattaaaataaatctaacgaaaatcgggctgttaca 12193250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 16095608 - 16095672
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||| |||| ||||||||||||||  | |||||||||||| | |||| |||| ||||||||||||    
T  16095608 acaaacacatataaacacacataaataataattaaaataattctagctaaaaacgggttgttaca 16095672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 14894553 - 14894608
Alignment:
Q  15 gagacaaataatcatagacaagcacaaataaacacacataataattaattaaaata 70  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  14894553 gagacaaataatcatatacaagcacatataaacacacataataaataattaaaata 14894608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 14355788 - 14355873
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| |||  ||||| | ||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| | |||||||    
T  14355788 cacagaggcaatcaatcacacacaagcacatataaacacacataataaataattaaaataattttagcgaaaatcgagctgttaca 14355873  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 14672257 - 14672342
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| ||| |||||| | ||||||||| ||||| ||| |||| ||||||||||||||| | || |||||||||||||||||||    
T  14672257 cacagaggcaattaatcacatacaagcacatataaatacatataaaaattaattaaaataaatctaacgaaaatcgggttgttaca 14672342  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 18027904 - 18027819
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||||| ||||||||| | ||||||||| ||||||||||||||||| |||||||||||| | || | |||| |||| |||||||    
T  18027904 cacagagataaataatcacacacaagcacatataaacacacataataaataattaaaataattctatcaaaaaacgggatgttaca 18027819  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 16896802 - 16896889
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    ||||||||||| | |||| | ||||||||| ||||||||||||||||| |||||||||||| | || | |||| |||| |||||||||    
T  16896802 cacagagacaattcatcacatacaagcacatataaacacacataataaataattaaaataattctaacaaaaaacgggatgttacaca 16896889  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 18558151 - 18558224
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaat 84  Q
    |||| |||||||||| || | ||||||||| ||||||| |||||||||||||||||||||| | || |||||||    
T  18558151 cacatagacaaataaacacatacaagcacatataaacatacataataattaattaaaataattctaacgaaaat 18558224  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 10975681 - 10975720
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataa 71  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  10975681 acaagcatatataaacacacataataattaattaaaataa 10975720  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 9296621 - 9296693
Alignment:
Q  9 agcacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaa 82  Q
    |||||| || |||||||||| | ||||||||| ||||| ||||||||||| ||| |||||||| | ||||||||    
T  9296621 agcacatagtcaaataatcacatacaagcacatataaatacacataataaataa-taaaataaatctagcgaaa 9296693  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 22868250 - 22868315
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagc-gaaaatcgggttgttaca 96  Q
    ||||||||| ||||||||||| || || |||||||||||| || |||  |||||||||||||||||    
T  22868250 acaagcacatataaacacacaaaaaaagtaattaaaataaataaagcaaaaaatcgggttgttaca 22868315  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 22461554 - 22461478
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| | ||||||||| ||||||||| || | ||  | | ||||||| | ||||||||||||||||||||||    
T  22461554 aaataatcacacacaagcacatataaacacatattaaaacgattaaaaataattctagcgaaaatcgggttgttaca 22461478  T

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Target: scaffold0412 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 3983 - 4068
Alignment:
Q  14 agagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||||||| | ||||||||| ||||||| ||||||| ||||| ||||| || |  |||||||||||| |||||||||||    
T  3983 agagacaaataatcacatacaagcacacataaacaaacataatgattaaataaaacaatttcagcgaaaatcggattgttacacaa 4068  T

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Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 42446 - 42358
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||||||| || | ||||||||| | || |||| ||||||| |||||||||||| | ||||||||| |||| ||||||||||    
T  42446 cacagagacaaataaacagacacaagcacatacaaccacatataataaataattaaaataattctagcgaaaaacgggctgttacacaa 42358  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 8626 - 8711
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| | |||||| | ||||||||| ||||||||||||||||| |||||||||||| | |||| |||| | || |||||||    
T  8626 cacagagacgagtaatcacatacaagcacatataaacacacataataaataattaaaataattctagcaaaaaacaggctgttaca 8711  T

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Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 19686 - 19750
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||| | |||||||||||||||||||||||||||||| | ||| ||||||| ||||| ||||    
T  19686 acaagcagatataaacacacataataattaattaaaataattctagggaaaatcaggttggtaca 19750  T

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Target: scaffold0021 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 16774 - 16838
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| |||||||||||  | ||||||||||||||| |  |||||||||||||||||||||    
T  16774 acaagcacatataaacacacaataaaattaattaaaataaatcgagcgaaaatcgggttgttaca 16838  T

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Target: scaffold0021; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 26305 - 26369
Alignment:
Q  32 acaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    ||||||||| |||||||||||  | ||||||||||||||| |  |||||||||||||||||||||    
T  26305 acaagcacatataaacacacaataaaattaattaaaataaatcgagcgaaaatcgggttgttaca 26369  T

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Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 8757 - 8831
Alignment:
Q  23 taatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||| | ||||||| |||||||||||||||||||  ||| ||||||| | ||||||||||| || ||||||||    
T  8757 taatcacatacaagcataaataaacacacataataacaaataaaaataaatctagcgaaaatcaggatgttacac 8831  T

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Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 85621 - 85575
Alignment:
Q  48 acacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||||    
T  85621 acacataataattcattaaaataattctagcgaaaatcgggttgtta 85575  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 202278 - 202193
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacac 97  Q
    |||||||||||||| ||| | ||||||||| ||||| ||||||||||| |||||||||||| | || |||||| ||  |||||||||    
T  202278 cacagagacaaata-tcacatacaagcacatataaatacacataataaataattaaaataattctatcgaaaaacgaattgttacac 202193  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 70276 - 70349
Alignment:
Q  23 taatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttaca 96  Q
    |||||| | |||||||||||||||||||||  | ||| | | ||||||| |||||||||||||||| |||||||    
T  70276 taatcacacacaagcacaaataaacacacaataaaataattaaaaataaatatagcgaaaatcgggctgttaca 70349  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 78001 - 78073
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaa 83  Q
    |||| ||||||||||||| | ||||||||  ||||| ||||||||||| ||||||||| || | |||||||||    
T  78001 cacacagacaaataatcacatacaagcacctataaatacacataataaataattaaaagaattctagcgaaaa 78073  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 61857 - 61945
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacacaa 99  Q
    ||||||||||| |||||| | | || || | ||| ||||||||||||| |||||||||||| | |||||||||   |||||||||||||    
T  61857 cacagagacaattaatcacatataaacaaatatagacacacataataaataattaaaataattctagcgaaaaataggttgttacacaa 61945  T

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Target: scaffold0964 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 2928 - 3015
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    |||| ||||||||||||| | ||||||||| ||||||| ||| ||||| |||||||| ||| | ||| ||||| |||| | |||||||    
T  2928 cacaaagacaaataatcagatacaagcacatataaacatacaaaataaataattaaattaattctagtgaaaaacgggctattacaca 3015  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 109093 - 109148
Alignment:
Q  27 catagacaagcacaaataaacacacataataattaattaaaataactatagcgaaa 82  Q
    |||| |||||| || ||||||||| |||||||||||||||||||| | ||||||||    
T  109093 catatacaagcgcatataaacacatataataattaattaaaataattctagcgaaa 109148  T

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Target: scaffold0331 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 5244 - 5163
Alignment:
Q  11 cacagagacaaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtt 93  Q
    ||||||| ||| |||||| | ||||||||| ||||||||||||||  || ||||||||||| | || ||||| ||||||||||    
T  5244 cacagaggcaattaatcacaaacaagcacatataaacacacataa-gatgaattaaaataaatctaacgaaattcgggttgtt 5163  T

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Target: scaffold0315 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 11935 - 11857
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgttacaca 98  Q
    ||||||||| | || |||| |||||||||||||||| ||  | | ||||||| | || |||||||||||||||||||||    
T  11935 aaataatcacatacgagcataaataaacacacataaaaacaattaaaaataaatctaacgaaaatcgggttgttacaca 11857  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 204162 - 204088
Alignment:
Q  20 aaataatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcgggttgtta 94  Q
    ||||||||| | |||| || | ||||||||||||||||| |||||||||||| | || |||||| |||| |||||    
T  204162 aaataatcacacacaaacatatataaacacacataataaataattaaaataattctaacgaaaaacgggctgtta 204088  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 151288 - 151223
Alignment:
Q  23 taatcatagacaagcacaaataaacacacataataattaattaaaataactatagcgaaaatcggg 88  Q
    |||||||  |||| |||| ||||||| |||||| ||||||||||||||| |||||| |||| ||||    
T  151288 taatcatgtacaatcacatataaacatacataaaaattaattaaaataattatagcaaaaaacggg 151223  T

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