View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_28 (Length: 341)
Name: NF20194_low_28
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 341
Target Start/End: Original strand, 10580013 - 10580320
Alignment:
| Q |
30 |
gaatatgatctaaaaaattgatgtttacttataatagtgatcggatggagtaataagaaactttgaatagtaaaatgtgattgttgataatagcattgag |
129 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
10580013 |
gaatatgatctaaaaaattgatgtttacttat--tagtgatcggacggagtaataagaaactttgaaaagtaaaatgtgattgttgatgatagtattgag |
10580110 |
T |
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| Q |
130 |
tatcatatacatgttattcaggttgaaattaatgaaaatttgactcaaaattttaaatcaatcatacaataaagatgcttccaatgcacatattgaaaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10580111 |
tatcatatacatgttattcaggttgaaattaatgaaaatttgactcaaaattttaaatcaatcatacaataaagatgcttccaatgcacatattgaaaca |
10580210 |
T |
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| Q |
230 |
ctttatgaccaaggtaaaattggtgagagtagatgatgatgatttagatttagcaaacactttctttttgagatggacatcaagaggaagtaacaacata |
329 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
10580211 |
ctttatgaccaaggtaaaattggtgagagtag-tgatgatgatttagatttagtaaacactttc-ttttgagatggacattaggaggaagtaacaacata |
10580308 |
T |
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| Q |
330 |
tttacttccttt |
341 |
Q |
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|||||||||||| |
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| T |
10580309 |
tttacttccttt |
10580320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 748750 - 748794
Alignment:
| Q |
37 |
atctaaaaaattgatgtttacttataatagtgatcggatggagta |
81 |
Q |
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| T |
748750 |
atctaaaaaattgttttttgcttataatagtgatcggatgaagta |
748794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 26851783 - 26851811
Alignment:
| Q |
4 |
aaattacattcgaacacccaaacatggaa |
32 |
Q |
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| T |
26851783 |
aaattacattcgaacacccaaacatggaa |
26851811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 41622136 - 41622092
Alignment:
| Q |
37 |
atctaaaaaattgatgtttacttataatagtgatcggatggagta |
81 |
Q |
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||||||||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
41622136 |
atctaaaaaatagatttttacttataatagtaatcggatggagta |
41622092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 43616249 - 43616291
Alignment:
| Q |
40 |
taaaaaattgatgtttacttataatagtgatcggatggagtaa |
82 |
Q |
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| T |
43616249 |
taaaaaattgatttttgcttataatagtgattggatggagtaa |
43616291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 23495603 - 23495538
Alignment:
| Q |
104 |
atgtgattgttgataatagcattgagtatcatatacatgttattcaggttgaaattaatgaaaatt |
169 |
Q |
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||||||||| ||||||||||||||||||| |||| | |||||||| ||||||||||| ||||| |
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| T |
23495603 |
atgtgattgctgataatagcattgagtatgctatatagattattcagactgaaattaatggaaatt |
23495538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5559468 - 5559424
Alignment:
| Q |
37 |
atctaaaaaattgatgtttacttataatagtgatcggatggagta |
81 |
Q |
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| T |
5559468 |
atctaaaaaattgatttttacttataacagtgatcggagggagta |
5559424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 16121066 - 16121110
Alignment:
| Q |
37 |
atctaaaaaattgatgtttacttataatagtgatcggatggagta |
81 |
Q |
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||||||||| ||||| ||| |||||||||||||||||| |||||| |
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| T |
16121066 |
atctaaaaagttgatttttgcttataatagtgatcggagggagta |
16121110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 16196728 - 16196800
Alignment:
| Q |
104 |
atgtgattgttgataatagcattgagtatcatatacatgttattcaggttgaaattaatgaaaatttgactca |
176 |
Q |
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| T |
16196728 |
atgtgattgctgataatagtagtaagtatacaatacatgttatttaggctgaaattaatggaaatttggctca |
16196800 |
T |
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