View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20194_low_3 (Length: 796)
Name: NF20194_low_3
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 1 - 775
Target Start/End: Original strand, 46081647 - 46082417
Alignment:
| Q |
1 |
tataaaacaataaattaccagttattagtaagctcacgaaatatgaaaaagaagtacatgacccaatagatcttctaacccatagtttcacgagaggaag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46081647 |
tataaaaaaataaattaccagttattagtaagctcacgaaatatgaaaaagaagtacatgacccaatagatcttctaacccatagtttcacgagaggaag |
46081746 |
T |
|
| Q |
101 |
cccttcgagattccagaagttctttcagccttttagtggccaatgaggcttcttctgtcttcctttgcaatacctgcaataaacatataataaagtgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46081747 |
cccttcgagattccagaagttctttcagccttttagtggccaatgaagcttcttctgttttcctttgcaatacctgcaataaacata--ataaagtgaga |
46081844 |
T |
|
| Q |
201 |
tgaacaacataaaatagaccacagcagcaagtgatttaaatcaactcaccatcttttgtctctgattcaaggctagcaacttatgcatctcgtattcatt |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46081845 |
tgaacagcataaaatagaccacagcagcaagtgatttaaatcaactcaccatcttttgtctctgattcaaggctagcaacttatgcatctcgtattcatt |
46081944 |
T |
|
| Q |
301 |
ccttcttccttctttcttaagctggttatgaatcaaaatatgcatcagaagactggttaccatcattcataattaaattatttgttgaaacaatattagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46081945 |
ccttcttccttctttcttaagctggttatgaatcaaaatatgcatcagaagactggttaccatcattcataattaaattatttgttgaaacaacattagt |
46082044 |
T |
|
| Q |
401 |
taacgatgtcatcatgcttccataaagactagaaagagttattcacttgtccgtccactaataagagtcaaactatagacgagaccaacatgtaaaggga |
500 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
46082045 |
taacaatgtcatcatgcttccgtaaagactag--agagttattcacttgtccctccactaataacagtcaaactatagacgagaccaacatgtaacggga |
46082142 |
T |
|
| Q |
501 |
aatagaactccagaagtnnnnnnnnntaattaccctctgtataaccatagaatggaataataaggtgatattgagattgttattaaacaggttacgggaa |
600 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46082143 |
aatagaactccagaagtaaaaaaaaaaaattaccctctgtataaccatagaatggaataataaggtgatattgagattgttattaaacaggttacgggaa |
46082242 |
T |
|
| Q |
601 |
atctttccttgtgcatttacctggagaacttctttttcacgggtaactttccataaccgaaattgttcagactcctgcttaatcttctgctgaagttgaa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46082243 |
atctttccttgtgcatttacctggagaacttctttttcacgggtaactttccataaccgaaattgttcagactcctgcttaatcttctgctgaagttgaa |
46082342 |
T |
|
| Q |
701 |
cctaaagaaaacaaaacatcaaccatgagtaaaaactcaaaaggattaaggaaataactggtactgcagtgtcac |
775 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46082343 |
cctaaagaaaacaaaacatcaaccatgagtaaaaactcaaaaggattaaggaaataactggtactgcagtgtcac |
46082417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 614 - 705
Target Start/End: Complemental strand, 27959867 - 27959776
Alignment:
| Q |
614 |
catttacctggagaacttctttttcacgggtaactttccataaccgaaattgttcagactcctgcttaatcttctgctgaagttgaacctaa |
705 |
Q |
| |
|
||||||||||||||||||| |||||||| | | |||||||||||| ||||||||||||||||||||||||||| || || | |||||||||| |
|
|
| T |
27959867 |
catttacctggagaacttccttttcacgtgaagctttccataacctaaattgttcagactcctgcttaatcttatgttgcaattgaacctaa |
27959776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 27960272 - 27960181
Alignment:
| Q |
84 |
agtttcacgagaggaagcccttcgagattccagaagttctttcagccttttagtggccaatgaggcttcttctgtcttcctttgcaatacct |
175 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||||| |||||||| || ||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
27960272 |
agtttcacgtgaggaagcctttcgagattccaaaagttcttttagcctttttgtagccaaggatgcttcttctgtcttcctttgcaacacct |
27960181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 27960106 - 27960029
Alignment:
| Q |
248 |
accatcttttgtctctgattcaaggctagcaacttatgcatctcgtattcattccttcttccttctttcttaagctgg |
325 |
Q |
| |
|
||||||||| |||||||||||| |||| || ||||||| |||| ||||||||| | || |||||||| ||||||||| |
|
|
| T |
27960106 |
accatctttgttctctgattcaacgctaacagcttatgcctctcatattcattcttcctcccttcttttttaagctgg |
27960029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University