View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_low_30 (Length: 331)

Name: NF20194_low_30
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20194_low_30
NF20194_low_30
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-281)||(2876-3156)
[»] scaffold0026 (2 HSPs)
scaffold0026 (2-210)||(12534-12742)
scaffold0026 (221-316)||(12437-12543)
[»] chr2 (18 HSPs)
chr2 (3-313)||(26582992-26583313)
chr2 (3-209)||(23168954-23169160)
chr2 (3-209)||(23580211-23580417)
chr2 (97-282)||(23089594-23089779)
chr2 (3-241)||(23062890-23063127)
chr2 (97-310)||(23101994-23102207)
chr2 (174-274)||(23878325-23878425)
chr2 (170-285)||(21907750-21907865)
chr2 (80-231)||(26884489-26884639)
chr2 (97-242)||(24660876-24661021)
chr2 (179-316)||(5706610-5706759)
chr2 (170-272)||(29281368-29281470)
chr2 (146-253)||(25181501-25181606)
chr2 (221-319)||(23264515-23264613)
chr2 (179-272)||(9957-10050)
chr2 (170-242)||(27208322-27208394)
chr2 (170-242)||(27210657-27210729)
chr2 (105-210)||(23264419-23264524)
[»] chr6 (21 HSPs)
chr6 (6-313)||(29614738-29615053)
chr6 (3-285)||(25396390-25396671)
chr6 (102-280)||(18799754-18799932)
chr6 (97-282)||(21565751-21565936)
chr6 (132-316)||(12167637-12167832)
chr6 (132-316)||(19286546-19286741)
chr6 (132-272)||(19877730-19877870)
chr6 (132-316)||(19883506-19883701)
chr6 (80-282)||(19300308-19300509)
chr6 (132-253)||(19786529-19786650)
chr6 (179-316)||(34640575-34640724)
chr6 (179-316)||(34647249-34647398)
chr6 (105-274)||(19471914-19472082)
chr6 (221-316)||(24513370-24513465)
chr6 (179-272)||(20008529-20008622)
chr6 (170-316)||(25470290-25470448)
chr6 (192-314)||(21365067-21365200)
chr6 (192-314)||(23969049-23969182)
chr6 (265-316)||(19786455-19786506)
chr6 (265-314)||(19877874-19877923)
chr6 (147-210)||(9186841-9186903)
[»] scaffold0456 (4 HSPs)
scaffold0456 (43-210)||(241-407)
scaffold0456 (43-210)||(7386-7552)
scaffold0456 (232-316)||(409-504)
scaffold0456 (232-316)||(7554-7649)
[»] chr3 (13 HSPs)
chr3 (5-272)||(41455741-41456010)
chr3 (3-274)||(18914320-18914590)
chr3 (170-310)||(55499658-55499798)
chr3 (170-280)||(16802029-16802139)
chr3 (79-261)||(13324381-13324562)
chr3 (180-313)||(24192274-24192418)
chr3 (79-210)||(13302844-13302974)
chr3 (79-210)||(13313520-13313650)
chr3 (170-272)||(14865216-14865319)
chr3 (266-315)||(10390034-10390083)
chr3 (266-315)||(10415123-10415172)
chr3 (266-315)||(10421793-10421842)
chr3 (215-280)||(12034007-12034072)
[»] chr7 (22 HSPs)
chr7 (7-272)||(13742860-13743121)
chr7 (97-319)||(16676623-16676845)
chr7 (97-319)||(17650859-17651081)
chr7 (7-313)||(13123506-13123822)
chr7 (7-263)||(12710496-12710751)
chr7 (132-316)||(13006706-13006901)
chr7 (3-241)||(46625166-46625403)
chr7 (170-280)||(11389910-11390020)
chr7 (3-241)||(13678670-13678906)
chr7 (196-274)||(20311631-20311709)
chr7 (181-316)||(12591230-12591377)
chr7 (147-262)||(11383440-11383554)
chr7 (170-272)||(16090457-16090559)
chr7 (170-242)||(14320243-14320315)
chr7 (196-285)||(21231554-21231643)
chr7 (192-272)||(2464758-2464838)
chr7 (192-272)||(3858007-3858087)
chr7 (265-314)||(3857953-3858003)
chr7 (182-272)||(29181690-29181780)
chr7 (215-263)||(2966383-2966431)
chr7 (265-313)||(12710435-12710483)
chr7 (215-263)||(20907038-20907086)
[»] chr4 (13 HSPs)
chr4 (3-316)||(8046420-8046744)
chr4 (196-319)||(15407485-15407608)
chr4 (180-282)||(14486052-14486154)
chr4 (91-231)||(11847397-11847537)
chr4 (79-142)||(14485975-14486037)
chr4 (179-316)||(53483022-53483171)
chr4 (170-272)||(16147412-16147514)
chr4 (97-209)||(8834185-8834297)
chr4 (146-263)||(27905613-27905729)
chr4 (149-241)||(15244566-15244658)
chr4 (99-271)||(13887086-13887258)
chr4 (99-271)||(13887943-13888115)
chr4 (97-241)||(15307415-15307563)
[»] scaffold1773 (1 HSPs)
scaffold1773 (3-272)||(324-592)
[»] scaffold0247 (1 HSPs)
scaffold0247 (97-316)||(10610-10829)
[»] scaffold0029 (4 HSPs)
scaffold0029 (6-210)||(111081-111284)
scaffold0029 (174-272)||(91783-91881)
scaffold0029 (174-272)||(97509-97607)
scaffold0029 (265-313)||(111330-111378)
[»] scaffold0154 (1 HSPs)
scaffold0154 (92-281)||(30194-30383)
[»] scaffold0053 (2 HSPs)
scaffold0053 (3-241)||(81826-82063)
scaffold0053 (170-272)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (3-298)||(116073-116366)
scaffold0004 (97-285)||(129204-129393)
[»] chr8 (8 HSPs)
chr8 (64-272)||(23865818-23866026)
chr8 (196-319)||(14057148-14057271)
chr8 (196-319)||(25111385-25111508)
chr8 (3-274)||(18613430-18613697)
chr8 (146-272)||(24321252-24321376)
chr8 (97-266)||(21931018-21931187)
chr8 (265-316)||(17054009-17054060)
chr8 (265-313)||(23866030-23866078)
[»] scaffold0028 (2 HSPs)
scaffold0028 (3-285)||(65311-65592)
scaffold0028 (3-65)||(1274-1336)
[»] scaffold0117 (1 HSPs)
scaffold0117 (65-313)||(9167-9425)
[»] scaffold0461 (2 HSPs)
scaffold0461 (147-319)||(581-752)
scaffold0461 (147-231)||(7605-7688)
[»] chr5 (17 HSPs)
chr5 (6-316)||(23527777-23528099)
chr5 (110-274)||(18408521-18408685)
chr5 (192-272)||(19236294-19236374)
chr5 (221-280)||(22439310-22439369)
chr5 (146-253)||(22460506-22460611)
chr5 (146-254)||(34829432-34829539)
chr5 (146-272)||(22467130-22467254)
chr5 (154-245)||(20781102-20781192)
chr5 (266-316)||(20819639-20819689)
chr5 (266-316)||(20826739-20826789)
chr5 (95-127)||(20819456-20819488)
chr5 (95-127)||(20826556-20826588)
chr5 (192-272)||(28889978-28890058)
chr5 (192-272)||(28896682-28896762)
chr5 (192-272)||(28909930-28910010)
chr5 (192-272)||(28931622-28931702)
chr5 (192-272)||(28946325-28946405)
[»] scaffold0025 (1 HSPs)
scaffold0025 (180-313)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (97-241)||(1117-1261)
[»] chr1 (10 HSPs)
chr1 (147-319)||(18712098-18712270)
chr1 (132-272)||(41111214-41111354)
chr1 (146-272)||(21710167-21710292)
chr1 (80-231)||(19961472-19961622)
chr1 (97-268)||(22030333-22030504)
chr1 (146-272)||(20851714-20851838)
chr1 (146-272)||(21705625-21705749)
chr1 (179-272)||(20858341-20858434)
chr1 (3-210)||(11157349-11157554)
chr1 (265-314)||(41111358-41111407)
[»] scaffold0139 (1 HSPs)
scaffold0139 (3-320)||(15521-15835)
[»] scaffold0124 (1 HSPs)
scaffold0124 (170-319)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (147-306)||(15475-15633)
scaffold0235 (170-306)||(23192-23328)
[»] scaffold1061 (1 HSPs)
scaffold1061 (3-210)||(1607-1813)
[»] scaffold0310 (1 HSPs)
scaffold0310 (196-313)||(6907-7024)
[»] scaffold0249 (1 HSPs)
scaffold0249 (3-91)||(7517-7604)
[»] scaffold0077 (1 HSPs)
scaffold0077 (182-310)||(4153-4281)
[»] scaffold0222 (1 HSPs)
scaffold0222 (110-274)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (146-272)||(4253-4377)
[»] scaffold0476 (1 HSPs)
scaffold0476 (170-274)||(3871-3975)
[»] scaffold0317 (1 HSPs)
scaffold0317 (3-241)||(563-799)
[»] scaffold0090 (1 HSPs)
scaffold0090 (123-274)||(17492-17643)
[»] scaffold0001 (2 HSPs)
scaffold0001 (80-231)||(493650-493800)
scaffold0001 (97-241)||(525062-525205)
[»] scaffold0261 (1 HSPs)
scaffold0261 (80-245)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (97-266)||(121200-121369)
scaffold0031 (97-266)||(132077-132246)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-282)||(102489-102766)
[»] scaffold0232 (1 HSPs)
scaffold0232 (97-204)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (80-263)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (196-319)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (105-210)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (80-231)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (146-281)||(3831-3966)
[»] scaffold0453 (1 HSPs)
scaffold0453 (80-209)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (170-231)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (97-141)||(6299-6343)
[»] scaffold0023 (2 HSPs)
scaffold0023 (215-272)||(134867-134924)
scaffold0023 (146-210)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (265-313)||(1343-1391)
[»] scaffold0335 (1 HSPs)
scaffold0335 (97-141)||(3328-3372)
[»] scaffold0006 (1 HSPs)
scaffold0006 (265-313)||(49597-49645)


Alignment Details
Target: scaffold0634 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2876 - 3156
Alignment:
Q  1 attatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctata 100  Q
    ||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  2876 attatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaaccaattcgatcaccggcttgttctagtgggattctggtacctata 2975  T
Q  101 caagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcg 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  2976 caagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggctgactaaggctcacttcg 3075  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 281  Q
    |||||||||| | |||||| |||||||||||||||||||| |||||||||||  ||||||| |  ||||||||||||||||    
T  3076 cttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgctcacagttcgcttgagcgaac 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 12742 - 12534
Alignment:
Q  2 ttatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatac 101  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12742 ttatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaattcgatcaccggcttgttctagtaggattctgatacctatac 12643  T
Q  102 aagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  12642 aagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggctgactaaggctcacttcgc 12543  T
Q  202 ttaagcgac 210  Q
    |||||||||    
T  12542 ttaagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 12543 - 12437
Alignment:
Q  221 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct-----------tgagcgaacttctaacagaatcaaaacggtttttcgc 309  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||||           ||||||||||||| |||||||||||| ||||||||||    
T  12543 cttaagcgaccggcttacagtaggtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgc 12444  T
Q  310 tcacagg 316  Q
    |||||||    
T  12443 tcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 26582992 - 26583313
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||| ||||||||||||||||||||| || ||| ||||||| ||| ||||||||||||| ||| |||||| ||||| || | |||||| ||     
T  26582992 tatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaattcgatcaccggctagttctaataggagtcggttacctacacc 26583091  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 202  Q
    |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||  |||||||||||| || ||||||||    
T  26583092 agggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcctgcacgaaacaaaagttcagaagaaggctgactaagacttacttcgct 26583191  T
Q  203 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacaga 291  Q
    |||||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||           | ||||||||||||||||||||| |||||    
T  26583192 taagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacgggtcgctcacggttcgcttgagcgaacttctgacaga 26583291  T
Q  292 atcaaaacggtttttcgctcac 313  Q
    ||||||| ||||||||||||||    
T  26583292 atcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 23169160 - 23168954
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||| |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||| || |||||||||||    
T  23169160 tatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatcaccagagtgttctagtaggatcctaatacctataca 23169061  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    ||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | ||  |||| |||||||||||||||| ||||  ||||    
T  23169060 agggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-aattttcagaaagaggctgactaagcctcagctcgc 23168962  T
Q  202 ttaagcga 209  Q
    ||||||||    
T  23168961 ttaagcga 23168954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 23580417 - 23580211
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||| |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||| || |||||||||||    
T  23580417 tatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatcaccagagtgttctagtaggatcctaatacctataca 23580318  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    ||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | ||  |||| |||||||||||||||| ||||  ||||    
T  23580317 agggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-aattttcagaaagaggctgactaagcctcagctcgc 23580219  T
Q  202 ttaagcga 209  Q
    ||||||||    
T  23580218 ttaagcga 23580211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 23089779 - 23089594
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23089779 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23089681  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 282  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  23089680 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 23089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 23062890 - 23063127
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttct-agtaggattctgatacctatac 101  Q
    ||||| |||||| | ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |||||||||| | |   ||||     
T  23062890 tatatgttcactaggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgttttcagtaggattcag-tgtatatat 23062987  T
Q  102 aagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcg 200  Q
    |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| ||||||||||||   ||||||    
T  23062988 aagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaaggtcaacttcg 23063086  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    |||||||||| | | |||| |||||||||||||||||||||    
T  23063087 cttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 310
Target Start/End: Complemental strand, 23102207 - 23101994
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23102207 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23102109  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    |||||||||||||||    ||||| |||||| || |||||||||| | |||||||||||||||||||| ||||||||| ||||||||  |  ||||||||    
T  23102108 cttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttctgctcgcttacggttcgcttaagcgaactcttggcagaatca 23102009  T
Q  296 aaacggtttttcgct 310  Q
    ||  |||||||||||    
T  23102008 aattggtttttcgct 23101994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 23878325 - 23878425
Alignment:
Q  174 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 23878423  T
Q  273 tg 274  Q
    ||    
T  23878424 tg 23878425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 21907750 - 21907865
Alignment:
Q  170 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 268  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 21907848  T
Q  269 cgcttgagcgaacttct 285  Q
    ||||| |||||||||||    
T  21907849 cgcttaagcgaacttct 21907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 26884489 - 26884639
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||||    
T  26884489 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaag 26884586  T
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  26884587 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 24660876 - 24661021
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||  ||||||||||||| ||||||||||| |       
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaag-taaaattcaaaaagtggctgactaagacctt 24660974  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 242  Q
    ||| ||||||||||| | | | || ||||||||||||||| ||||||    
T  24660975 ctttgcttaagcgacggctggctcgcttaagcgaccggctcacagaa 24661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 5706759 - 5706610
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 266  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 5706660  T
Q  267 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  5706659 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 29281368 - 29281470
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || ||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtc 29281467  T
Q  270 gct 272  Q
    |||    
T  29281468 gct 29281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 25181606 - 25181501
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||||||||||||| | |||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  25181606 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggt 25181509  T
Q  246 ctgggttc 253  Q
    ||||||||    
T  25181508 ctgggttc 25181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 23264515 - 23264613
Alignment:
Q  221 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 319  Q
    |||||||||||||||||||||  ||| |||||  ||||||| | ||||||||||||||||||||| ||| ||| |||| | ||||||||| || |||||    
T  23264515 cttaagcgaccggcttacagagagtcggggtttcgctcgctaacggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 9957 - 10050
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 242  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 242  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 23264419 - 23264524
Alignment:
Q  105 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 202  Q
    ||||||||||||| || | ||||||| | ||||||||| | | |||||| |||||||| || ||| ||||||||| |||||||||||| ||| |||||||    
T  23264419 ggttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggc-aaagttcaaaaagtggctgactaagg-tcatcttcgct 23264516  T
Q  203 taagcgac 210  Q
    ||||||||    
T  23264517 taagcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 6 - 313
Target Start/End: Complemental strand, 29615053 - 29614738
Alignment:
Q  6 atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagg 105  Q
    ||||||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||| |||||| ||| |||||| || ||||||| ||||||| | |||    
T  29615053 atattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaattcaatcaccggctcgttctaataagattctgttacctatgccagg 29614954  T
Q  106 gttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaa 205  Q
    ||||||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||| |||| |   |||||||||||||||||||||||||||    
T  29614953 gttatactagttaaaggaaatattatagaatgctcaagaagttccctcatgcacgaaacaaaagttcaga---aggctgactaaggctcacttcgcttaa 29614857  T
Q  206 gcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatc 294  Q
    ||||| | |||||| |||||||||||| ||||||| |||||||||||| ||||||||           | ||||||||||||||||||||| ||||||||    
T  29614856 gcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgcttacgggttgctcacggttcgcttgagcgaacttctgacagaatc 29614757  T
Q  295 aaaacggtttttcgctcac 313  Q
    |||| ||||||||||||||    
T  29614756 aaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 25396390 - 25396671
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||  |||||||||||||| ||||   ||||  |||||||||| | | | ||||||    
T  25396390 tatatattcacttggtttcatactcaatcatatccaaaattcactaaattcaaccaattcgattaccaatgtgtttcagtaggattcag-tgcatataca 25396488  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    ||||||||||||||| || ||||||||||||||||||||| | | | |||| |||||| |||| | ||||||||||| || |||||||| |  |||||||    
T  25396489 agggttatacaagttgaaagaaacattttagaatgctcaaaaggattccctagtgcactaagc-ataattcaaaaagtggttgactaagacctacttcgc 25396587  T
Q  202 ttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 285  Q
    ||||||||| | | | || |||||||||||| ||||||||  ||  |||||| ||||||| | ||||||||| || ||||||||    
T  25396588 ttaagcgacggctggctcgcttaagcgaccgacttacagagagttggggttccgctcgctaacggttcgcttaagtgaacttct 25396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 18799754 - 18799932
Alignment:
Q  102 aagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcg 200  Q
    |||||||||||||||| || | ||||| || ||||||| || | | ||||||  |||| || |||||  ||||||||| |||||||||||| | ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccctaatgcatgaggcaaag-ttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 280  Q
    |||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||| ||||||||| ||||||    
T  18799853 cttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggttcgcttaagcgaa 18799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 21565936 - 21565751
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | || |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  21565936 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 21565838  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 282  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  21565837 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 21565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 12167637 - 12167832
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  12167637 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 12167735  T
Q  232 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  12167736 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 19286546 - 19286741
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19286546 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19286644  T
Q  232 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19286645 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 272
Target Start/End: Original strand, 19877730 - 19877870
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19877730 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19877828  T
Q  232 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 272  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  19877829 agcttacagtaggttctgggttcagttcgcttacgggtcgct 19877870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 19883506 - 19883701
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||| | ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19883506 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19883604  T
Q  232 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19883605 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 282
Target Start/End: Complemental strand, 19300509 - 19300308
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||| || | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19300509 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19300412  T
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct-gctcgcttagggttcgcttgagc 277  Q
    |||||||||||||||||  ||||||||||||  | ||| || ||||||||||| || ||||| | || ||| |||| ||||||| | |||||||| ||||    
T  19300411 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctcgctcacggttcgctcgagc 19300313  T
Q  278 gaact 282  Q
    |||||    
T  19300312 gaact 19300308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 19786650 - 19786529
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||  |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19786650 agaacgctcaagaagtcccctcatgcattaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19786552  T
Q  232 ggcttacagaagg-tctgggttc 253  Q
     |||||||| ||| |||||||||    
T  19786551 agcttacagtaggttctgggttc 19786529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 34640724 - 34640575
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 266  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34640625  T
Q  267 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34640624 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 34647398 - 34647249
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 266  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34647299  T
Q  267 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34647298 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 274
Target Start/End: Complemental strand, 19472082 - 19471914
Alignment:
Q  105 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 203  Q
    ||||||||||||| |||||||||||| | ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||| ||| |   ||||||||    
T  19472082 ggttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgac-aagaccttcttcgctt 19471985  T
Q  204 aagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    ||||||  | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | || |||||||    
T  19471984 aagcgatggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttg 19471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 24513465 - 24513370
Alignment:
Q  221 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    ||||||||||||||| |||||| || ||||||| ||||||| | |||||||||||||||||||||   ||||| |||| | ||||||||| |||||    
T  24513465 cttaagcgaccggctcacagaaagtttgggttccgctcgctaacggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 20008622 - 20008529
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 25470448 - 25470290
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt------ 262  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||| |||||| || | ||||||          
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacgggt 25470349  T
Q  263 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
         | |||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  25470348 cgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 21365200 - 21365067
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 280  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  21365200 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 21365101  T
Q  281 cttctaacagaatcaaaacggtttttcgctcaca 314  Q
    |||   |||||||||||| |||||||||||||||    
T  21365100 ctttggacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 23969182 - 23969049
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 280  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  23969182 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23969083  T
Q  281 cttctaacagaatcaaaacggtttttcgctcaca 314  Q
    |||   |||||||||||| |||||||||||||||    
T  23969082 ctttggacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 19786506 - 19786455
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19786506 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 19877874 - 19877923
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 314  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  19877874 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 9186841 - 9186903
Alignment:
Q  147 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgac 210  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||||||||||    
T  9186841 tcccctagtgcacgaagcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 241 - 407
Alignment:
Q  43 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 142  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  241 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 340  T
Q  143 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 210  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  341 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 7386 - 7552
Alignment:
Q  43 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 142  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  7386 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 7485  T
Q  143 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 210  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  7486 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 409 - 504
Alignment:
Q  232 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  409 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 7554 - 7649
Alignment:
Q  232 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  7554 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 41456010 - 41455741
Alignment:
Q  5 tatattcacttgat-ttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaa 103  Q
    ||||||||||| || ||| |||||||| ||||| || ||| ||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||| |    
T  41456010 tatattcacttaatcttcctactcaattatctccaacatttactaacaccaatcaattcgattgccagcttgttctagtaggattctgatacctatacta 41455911  T
Q  104 gggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 203  Q
    || |||||||||||||||   |  ||  |||| ||||| ||||||||||| ||||| |||||| | |||| ||| ||||||||||||| |||||||||||    
T  41455910 ggattatacaagttaaagaggaagttaaagaacgctcaggaagtcccctcatgcactaagcaacagttcagaaaaaggctgactaaggttcacttcgctt 41455811  T
Q  204 aagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggttcgct 272  Q
    ||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |||||    
T  41455810 aagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgct 41455741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 274
Target Start/End: Original strand, 18914320 - 18914590
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||  |||| |||||||||| || |   |||| |    
T  18914320 tatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaactaattccatcaatagagtgttttagtaggattatg-tgtatatata 18914418  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | |||||||||||||  | |||| ||| |   |||||||| | | ||||||  ||||||| |||||||||| ||||| |||||||||||| ||| |||||    
T  18914419 aaggttatacaagttggaagaaatattattatatgctcaaaaggatcccctaatgcacgaggcaaaaattc-aaaagtggctgactaagg-tcatcttcg 18914516  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    |||||||||  |   |||| ||||||||||||||||| |||  ||  |||||| ||||||| | ||||||||||    
T  18914517 cttaagcgatggcaggttcgcttaagcgaccggcttatagagagttggggttccgctcgctaaaggttcgcttg 18914590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 55499798 - 55499658
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| |||||||||||||||||||| | |||| ||||||||||||||| |||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgcttacggttc 55499699  T
Q  270 gcttgagcgaacttctaacagaatcaaaacggtttttcgct 310  Q
    | |||||||||||  |  ||||||||||  |||||||||||    
T  55499698 gtttgagcgaactcttggcagaatcaaattggtttttcgct 55499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 16802139 - 16802029
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 16802040  T
Q  270 gcttgagcgaa 280  Q
    |||||||||||    
T  16802039 gcttgagcgaa 16802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 261
Target Start/End: Complemental strand, 13324562 - 13324381
Alignment:
Q  79 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 177  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13324562 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13324465  T
Q  178 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgct 261  Q
    | ||||||||||||||||  ||||||||||||  | | | || |||||||||| ||||| ||||| || |||||| ||||||||    
T  13324464 gtggctgactaaggctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcgct 13324381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 24192274 - 24192418
Alignment:
Q  180 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggtt-----------ctgctcgcttagggtt 268  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||           | | ||||| | ||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacggtt 24192373  T
Q  269 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  24192374 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 210
Target Start/End: Complemental strand, 13302974 - 13302844
Alignment:
Q  79 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 177  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13302974 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13302877  T
Q  178 gaggctgactaaggctcacttcgcttaagcgac 210  Q
    | ||||||||||||||||  |||||||||||||    
T  13302876 gtggctgactaaggctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 210
Target Start/End: Complemental strand, 13313650 - 13313520
Alignment:
Q  79 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 177  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| ||  ||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13313650 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13313553  T
Q  178 gaggctgactaaggctcacttcgcttaagcgac 210  Q
    | ||||||||||||||||  |||||||||||||    
T  13313552 gtggctgactaaggctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 14865216 - 14865319
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcga-cagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 268  Q
    |||| ||| |||||||||||  |||| ||||||||||||| | | |||||| ||||||||||| ||||| || |||||||||||| | ||||||| || |    
T  14865216 ttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagcttagagtaggtctgggttcagttcgcttacgggt 14865315  T
Q  269 cgct 272  Q
    ||||    
T  14865316 cgct 14865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 10390083 - 10390034
Alignment:
Q  266 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 315  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10390083 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 10415172 - 10415123
Alignment:
Q  266 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 315  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10415172 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 10421842 - 10421793
Alignment:
Q  266 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 315  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10421842 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 12034072 - 12034007
Alignment:
Q  215 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 280  Q
    ||||| ||||||||||| |||||||| |||||||||||  | ||||||| || |||||| ||||||    
T  12034072 agttcgcttaagcgaccagcttacagtaggtctgggtttagttcgcttacgggtcgcttaagcgaa 12034007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 13742860 - 13743121
Alignment:
Q  7 tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaaggg 106  Q
    |||||||||| |||||||| |||||| ||| || ||| ||||||| |||  ||| | |||  | ||| |||||| |||||||| | |||||| || ||||    
T  13742860 tattcacttgttttcatacacaatcacctccaacatt-actaacaccaattaatccaatcctcggctcgttctaataggattcggttacctacaccaggg 13742958  T
Q  107 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 206  Q
    |||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||||||    
T  13742959 ttatactagttaaaagaaatattatagaatgctcaagaagtcccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgcttaag 13743055  T
Q  207 cgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| | |||||| ||||||||||||||||| || |||||||||||| ||||||||| || |||||    
T  13743056 cgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgct 13743121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 16676623 - 16676845
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  16676623 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 16676721  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  16676722 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 16676821  T
Q  296 aaacggtttttcgctcacaggttc 319  Q
    ||| ||||||||||| ||||||||    
T  16676822 aaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 17650859 - 17651081
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  17650859 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 17650957  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  17650958 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 17651057  T
Q  296 aaacggtttttcgctcacaggttc 319  Q
    ||| ||||||||||| ||||||||    
T  17651058 aaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 13123822 - 13123506
Alignment:
Q  7 tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaaggg 106  Q
    |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||| | |||||| |||||||||| |||| ||||| |||||| || | ||    
T  13123822 tattcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcaccggcttgttctaataggcttctgctacctacaccaagg 13123723  T
Q  107 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 206  Q
    |||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||||||    
T  13123722 ttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaag 13123624  T
Q  207 cgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatca 295  Q
    |||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||           | |||||||||||||||||||   |||||||||    
T  13123623 cgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatca 13123524  T
Q  296 aaacggtttttcgctcac 313  Q
    ||| ||||||||||||||    
T  13123523 aaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 12710751 - 12710496
Alignment:
Q  7 tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaaggg 106  Q
    |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||| | |||||| ||||||| || |||| ||||  |||||| || | ||    
T  12710751 tattcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcaccggcttgttataataggcttcttctacctacaccaagg 12710652  T
Q  107 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 206  Q
    |||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||||||    
T  12710651 ttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaag 12710553  T
Q  207 cgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 263  Q
    |||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||    
T  12710552 cgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgctta 12710496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 13006706 - 13006901
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  13006706 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 13006804  T
Q  232 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  13006805 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 46625166 - 46625403
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||| ||| |||||||||||||||| |  |||||||||||   ||||||||||| || ||||   ||||  |||||||||  | | | |||||     
T  46625166 tatatattcatttggtttcatactcaatcatattcaaaattcactatattcaaccaattcaattaccaatgtgtttcagtaggatttag-tgcatatacc 46625264  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    ||||| ||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||| ||||| |||||| || ||||||||||| |  |||||||    
T  46625265 agggtcatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaa-ttcaaagagtggctgactaagacctacttcgc 46625363  T
Q  202 ttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    ||||||||| | | | || ||||||||||| |||||||||    
T  46625364 ttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 11390020 - 11389910
Alignment:
Q  170 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 268  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||||| || |||| | |||||||||| ||||||||| ||||    
T  11390020 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgcttacggtt 11389922  T
Q  269 cgcttgagcgaa 280  Q
    ||||||||||||    
T  11389921 cgcttgagcgaa 11389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 13678670 - 13678906
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  |||||||||| | | | |||| |    
T  13678670 tatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcagtaggattcag-tgcatatata 13678767  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |||||||||||| ||| |||||    
T  13678768 aaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcg 13678865  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    |||||||||| | | |||| |||||||||||||||||||||    
T  13678866 cttaagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 20311709 - 20311631
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    ||||||||||||||| | ||| || |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||    
T  20311709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgcttacggttcgcttg 20311631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  181 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggtt 268  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  269 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||| ||   |||||||||||| |||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 11383554 - 11383440
Alignment:
Q  147 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| |||| | ||    
T  11383554 tcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagt 11383457  T
Q  246 ctgggttctgctcgctt 262  Q
    |||||||| ||||||||    
T  11383456 ctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 16090457 - 16090559
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16090556  T
Q  270 gct 272  Q
    |||    
T  16090557 gct 16090559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 242  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 21231643 - 21231554
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 285  Q
    |||||||||||||||    ||||  ||||||||||| ||| |||||| ||  |||||| ||||||| | |||||||||||||||||||||    
T  21231643 cttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctgacggttcgcttgagcgaacttct 21231554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 2464758 - 2464838
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  2464758 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 2464838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 3858087 - 3858007
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  3858087 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 3858007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 3858003 - 3857953
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatc-aaaacggtttttcgctcaca 314  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||||||    
T  3858003 ggttcgcttgagcgaactttgaacagaatcaaaaatggtttttcgctcaca 3857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 29181780 - 29181690
Alignment:
Q  182 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    ||||||||  |||| || ||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  29181780 ctgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttatgggtcgct 29181690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 2966383 - 2966431
Alignment:
Q  215 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 263  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  2966383 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 2966431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 12710483 - 12710435
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    |||||||||||||||||||   |||||||||||| ||||||| ||||||    
T  12710483 ggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 20907086 - 20907038
Alignment:
Q  215 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 263  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  20907086 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 20907038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 8046744 - 8046420
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||| |||||||| |||||||||| || ||| ||||||| ||| |||| | ||| || |||||||||| |||||||| | |||||| ||     
T  8046744 tatatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcgccggcttgttctaataggattcggttacctacacc 8046645  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 202  Q
    |||||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| ||||||||||||||||||||||||    
T  8046644 agggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgct 8046545  T
Q  203 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacaga 291  Q
    ||||||||   ||| || |||||||||||  |||| || |||||||||||| | ||||||           | |||||||||||||||||||   |||||    
T  8046544 taagcgacgtctagctcgcttaagcgaccaacttatagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacaga 8046445  T
Q  292 atcaaaacggtttttcgctcacagg 316  Q
    ||||||| |||||||||||||||||    
T  8046444 atcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 15407485 - 15407608
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    ||||||||||||||| |  ||||| ||||||||||||||| |||||| |||| ||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  15407485 cttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 15407584  T
Q  296 aaacggtttttcgctcacaggttc 319  Q
    ||| ||||||||||| || |||||    
T  15407585 aaatggtttttcgcttacgggttc 15407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 14486052 - 14486154
Alignment:
Q  180 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 279  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||  || ||||||| ||||||| | |||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggttcgcttgagcga 14486151  T
Q  280 act 282  Q
    |||    
T  14486152 act 14486154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 11847397 - 11847537
Alignment:
Q  91 gatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaa 189  Q
    |||||||||||||| |||||||||| || | |||||| ||   ||| ||||| | | |||||| |||||| |||||||  |||| |||||||||||||||    
T  11847397 gatacctatacaagagttatacaagctagaagaaacacttacaaatactcaaaagggtcccctagtgcacaaagcaaag-ttcagaaagaggctgactaa 11847495  T
Q  190 ggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    ||||||  ||||||||||||| | |||||| |||||||||||    
T  11847496 ggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 14485975 - 14486037
Alignment:
Q  79 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 142  Q
    |||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  14485975 tagtaggatt-tgatacctatacaagggttatacaagctgaaagaaacattttagaatgctcaa 14486037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 53483022 - 53483171
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 266  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 53483121  T
Q  267 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  53483122 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 16147514 - 16147412
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16147415  T
Q  270 gct 272  Q
    |||    
T  16147414 gct 16147412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 8834185 - 8834297
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||||||||| || |||||||||||||| |||||| | | | | || ||||| |||||||||| |||||||| ||||||||||| |       
T  8834185 tatacaaaggttatacaagttgaaagaaacattttagaacgctcaaaaggattctctagtgcatgaagcaaaaa-tcaaaaagtggctgactaagacctt 8834283  T
Q  196 cttcgcttaagcga 209  Q
    ||||||||||||||    
T  8834284 cttcgcttaagcga 8834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 27905613 - 27905729
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||  | ||| || ||||||||| | ||| ||| |||||    
T  27905613 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgatcagctcacaaaaggt 27905711  T
Q  246 ctgggttctgctcgctta 263  Q
      ||||| ||||||||||    
T  27905712 tggggttttgctcgctta 27905729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 15244566 - 15244658
Alignment:
Q  149 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |   ||||| ||||||||| | |   || |||||||||||||||||||||    
T  15244566 ccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacaga 15244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 13887086 - 13887258
Alignment:
Q  99 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 196  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887086 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13887183  T
Q  197 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 271  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13887184 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13887258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 13887943 - 13888115
Alignment:
Q  99 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 196  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887943 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13888040  T
Q  197 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 271  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13888041 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13888115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 15307415 - 15307563
Alignment:
Q  97 tatacaagggttatacaagtt---aaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggc 192  Q
    ||||||| |||||||||||||   |||  |||||||||| ||||||| | | | | |||| ||||||||||||||  ||| ||||| ||||||||||| |    
T  15307415 tatacaaaggttatacaagttgaaaaaaaaaacattttaaaatgctcgaaaggattccctagtgcacgaagcaaagtttcgaaaagtggctgactaagac 15307514  T
Q  193 tcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
       ||||||||||||||  | | | || |||||||||||| ||||||||    
T  15307515 cttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacaga 15307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 324 - 592
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||| |||||||| | |||||||| || ||| ||||||| ||| |||| | |||||  |||||||||| |||||||| | |||||| ||     
T  324 tatatattcacttgttttcatacaccatcatctccaacatttactaacaccaatcaatccaatcactggcttgttctaataggattcggttacctacacc 423  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 202  Q
    | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||    
T  424 aaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgct 522  T
Q  203 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  523 taagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 316
Target Start/End: Original strand, 10610 - 10829
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgct-caagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    |||| ||||||||||||||||||| |  |||| ||  |||||| ||||   ||||||  ||||||| |||||  ||||||||| |||||||||||    |    
T  10610 tatataagggttatacaagttaaaagggacatgtttaaatgctacaagggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagatcaa 10708  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttagggttcgcttgagcgaacttctgacagaatca 10808  T
Q  296 aaacggtttttcgctcacagg 316  Q
    ||| |||||||||||||||||    
T  10809 aaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 111081 - 111284
Alignment:
Q  6 atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagg 105  Q
    ||||||||||| |||||||| |||||||||| || ||| ||||||| ||| |||| | |||||| |||||||||| |||||||| | |||||| || |||    
T  111081 atattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcaccggcttgttctaataggattcagttacctacaccagg 111180  T
Q  106 gttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaa 205  Q
    ||||||| |||||||||| | ||| ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||    
T  111181 gttatactagttaaaggagaaattatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaa 111279  T
Q  206 gcgac 210  Q
    |||||    
T  111280 gcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 91881 - 91783
Alignment:
Q  174 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  91881 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 91783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 97607 - 97509
Alignment:
Q  174 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  97607 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 97509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 111330 - 111378
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  111330 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 281
Target Start/End: Original strand, 30194 - 30383
Alignment:
Q  92 atacctatacaagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaag 190  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||| |||| |||||||||||    
T  30194 atacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagc-aaaattcagaaagtggctgactaag 30292  T
Q  191 gctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 281  Q
    |||||||||||||||||||  | | | || |||||||||||||||||||||| || | ||||  ||||||| | |||||||||||| ||||    
T  30293 gctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggttcgcttgagtgaac 30383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 82063 - 81826
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||| |||||||||||| ||| || ||||||||||||  |||||||||||||  ||||   ||||  |||||||||| | | | ||||||    
T  82063 tatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaattcgactaccaatgtgtttaagtaggattcag-tgcatataca 81965  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    ||||||||||||||| || ||||||||||| ||||||||| | | | |||| ||| ||||||||||| ||||||||| ||||||||||| |  |||||||    
T  81964 agggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaa-ttcaaaaagtggctgactaagacctacttcgc 81866  T
Q  202 ttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    ||||||||| | | | || |||||||||||| ||||||||    
T  81865 ttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 80174 - 80072
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 80075  T
Q  270 gct 272  Q
    |||    
T  80074 gct 80072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 116073 - 116366
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||| ||||   ||||  |||||||||| | |   |||| |    
T  116073 tatatgttcacttgatttcatactcaatcatctcaaaa-ttcactaaactcaactaattcgattaccaaggtgtttcagtaggattcag-tgtgtatata 116170  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | ||||||||| ||| || ||||||||||| ||| ||||| | | |||||| |||||||| |||||  ||||||||  |||||||||||| ||| |||||    
T  116171 aaggttatacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaaatggctgactaagg-tcatcttcg 116268  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaa 298  Q
    |||||||||| | | |||| |||||||||||||||||||||  ||  || ||  ||||||| | ||||||||||||||||||||| ||||||| ||||    
T  116269 cttaagcgacggctggttcgcttaagcgaccggcttacagagagttgggatttcgctcgctaacggttcgcttgagcgaacttctgacagaatgaaaa 116366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 285
Target Start/End: Complemental strand, 129393 - 129204
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 194  Q
    ||||||| ||||||||||||| |||||||||||| | || ||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| |      
T  129393 tatacaaaggttatacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagacct 129295  T
Q  195 acttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 285  Q
     ||||||||||||||| | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | ||||||||| |||||||||||    
T  129294 tcttcgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggttcgcttaagcgaacttct 129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 64 - 272
Target Start/End: Original strand, 23865818 - 23866026
Alignment:
Q  64 atcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaag 163  Q
    |||||| |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| |||    
T  23865818 atcaccggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaag 23865917  T
Q  164 caaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 263  Q
     || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||    
T  23865918 taatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgctta 23866017  T
Q  264 gggttcgct 272  Q
     || |||||    
T  23866018 cgggtcgct 23866026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 14057271 - 14057148
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    ||||||||||||||| | ||| || ||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||| |  ||||||||    
T  14057271 cttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttatggcagaatca 14057172  T
Q  296 aaacggtttttcgctcacaggttc 319  Q
    ||| |||||||| ||||| |||||    
T  14057171 aaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 25111385 - 25111508
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    ||||||||||||||| |  ||||| |||||||||||| || |||||| |||||||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  25111385 cttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 25111484  T
Q  296 aaacggtttttcgctcacaggttc 319  Q
    ||| ||||||||||| || |||||    
T  25111485 aaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 274
Target Start/End: Original strand, 18613430 - 18613697
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| ||||| || ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||  |  ||| |||||||||| | |   |||| |    
T  18613430 tatatgttcacatggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaagtgtttc-agtaggattcag-tgtatatata 18613526  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | ||||||||||||| || | ||||||||  ||||||||||| | |||||| |||||||| |||||  ||||||| | ||| |||||||| ||| |||||    
T  18613527 aaggttatacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaag-ttcaaaa-gtggccgactaagg-tcatcttcg 18613623  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    |||||||||| | | |||| ||||||||||| |||||||||  ||  |||||| ||||||| | ||||||||||    
T  18613624 cttaagcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggttcgcttg 18613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 24321376 - 24321252
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  24321376 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 24321279  T
Q  246 ctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | ||||||| || |||||    
T  24321278 ctgggttcagttcgcttacgggtcgct 24321252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 21931018 - 21931187
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctga-ctaaggct 193  Q
    ||||||| ||||||||||||| || ||||||||||||||||||| ||| |  | |||| ||| | |||||||||  |||||||| |||||| | |||||     
T  21931018 tatacaaaggttatacaagttgaaagaaacattttagaatgctc-agatggattccctagtggaggaagcaaaa--tcaaaaagtggctgaccaaaggcc 21931114  T
Q  194 cacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 266  Q
      ||||||||||||||  | | ||||||||||||||||| ||||||||  ||  | |||||||||||| ||||    
T  21931115 ttcttcgcttaagcgaaggctggttcacttaagcgaccgacttacagagagttggtgttctgctcgctaaggg 21931187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 17054009 - 17054060
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  17054009 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 23866030 - 23866078
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    |||||||||||||||||||   |||||||||||| ||||||||| ||||    
T  23866030 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 65311 - 65592
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||| |||||||||||||||  || ||||||||||||  | |||||||||||| ||||   |||| ||||||||||| | | | |||| |    
T  65311 tatatattcacttggtttcatactcaatcaaatccaaaattcactaaacttaaccaattcgattaccaatgtgttttagtaggattcag-tgcatatata 65409  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 201  Q
    |  |||||||||||| || ||||||||||| |||| |||| | | |||||| |||||||| |||||| ||||||||| ||||||||||||    || |||    
T  65410 aaagttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagtgcacgaggcaaaa-ttcaaaaagtggctgactaaggtcttctccgc 65508  T
Q  202 ttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 285  Q
    ||||| ||| | | |||| |||||||||||||||||||||  ||  |||||| ||||||| | |||||| || |||||||||||    
T  65509 ttaagtgacggctggttcgcttaagcgaccggcttacagagagttggggttccgctcgctaacggttcggttaagcgaacttct 65592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 1274 - 1336
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 65  Q
    ||||| |||||||| |||||||||||||||| || |||| |||||||  ||||||||||||||    
T  1274 tatatgttcacttggtttcatactcaatcatatccaaaactcactaaattcaaccaattcgat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 313
Target Start/End: Complemental strand, 9425 - 9167
Alignment:
Q  65 tcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagc 164  Q
    ||||| |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  ||  |||||||||||||||||||||| ||||| |||     
T  9425 tcaccggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttacagaatgctcaagaagtcccctcatgcactaagt 9326  T
Q  165 aaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-- 262  Q
    |||| || | ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||      
T  9325 aaaagtttagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttat 9227  T
Q  263 ---------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
             | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  9226 gggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 147 - 319
Target Start/End: Complemental strand, 752 - 581
Alignment:
Q  147 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||||| ||    
T  752 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaaagt 655  T
Q  246 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 319  Q
      |||||  ||||||| | ||||||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  654 tggggtttcgctcgctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 7688 - 7605
Alignment:
Q  147 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7688 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 23527777 - 23528099
Alignment:
Q  6 atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaacca-attcgatcaccagcttgttctagtaggattctgatacctatacaag 104  Q
    ||||||||||| ||||| || ||| |||||| || ||| ||||||| ||| || || | | |||| | |||||||| |||||||  | |||||| || ||    
T  23527777 atattcacttgctttcacacccaaacatctccaacatttactaacaccaatcatatccaaacaccggattgttctaataggatttggttacctacaccag 23527876  T
Q  105 ggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 204  Q
    |||||||| ||||||||   |  ||  |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| ||||||||||||    
T  23527877 ggttatactagttaaagaggaagttaaagaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgctta 23527975  T
Q  205 agcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaa 292  Q
    |||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||    
T  23527976 agcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaa 23528075  T
Q  293 tcaaaacggtttttcgctcacagg 316  Q
    | |||| |||||||||||||||||    
T  23528076 tgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 18408685 - 18408521
Alignment:
Q  110 tacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcactt-cgcttaagc 207  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| || |||||||||    
T  18408685 tacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcattttcgcttaagc 18408588  T
Q  208 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    ||| | |||||  |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  18408587 gacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 18408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 19236294 - 19236374
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgct 19236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 22439369 - 22439310
Alignment:
Q  221 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 280  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  22439369 cttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggttcacttaagcgaa 22439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 22460506 - 22460611
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  22460506 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 22460603  T
Q  246 ctgggttc 253  Q
    ||||||||    
T  22460604 ctgggttc 22460611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 34829432 - 34829539
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  34829432 gtcccctagtgcacgaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 34829530  T
Q  246 ctgggttct 254  Q
      |||||||    
T  34829531 tggggttct 34829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 22467130 - 22467254
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| | |||||||||||| | |||||| ||||| ||||| |||||||| ||||    
T  22467130 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagtacgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggt 22467227  T
Q  246 ctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | ||||||| || |||||    
T  22467228 ctgggttcagttcgcttatgggtcgct 22467254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 20781102 - 20781192
Alignment:
Q  154 gtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||||||||||| |||| ||| |||||||||||  || | |||||||||||||| | ||| || ||||||||||| ||| ||| |||||    
T  20781102 gtgcacgaagcaaaa-ttcagaaaaaggctgactaacacttagttcgcttaagcgacgggtagctcgcttaagcgaccagctcacacaaggt 20781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 20819639 - 20819689
Alignment:
Q  266 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20819639 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 20826739 - 20826789
Alignment:
Q  266 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 316  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20826739 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 20819456 - 20819488
Alignment:
Q  95 cctatacaagggttatacaagttaaaggaaaca 127  Q
    ||||||||||||||||||||| |||||||||||    
T  20819456 cctatacaagggttatacaagctaaaggaaaca 20819488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 20826556 - 20826588
Alignment:
Q  95 cctatacaagggttatacaagttaaaggaaaca 127  Q
    ||||||||||||||||||||| |||||||||||    
T  20826556 cctatacaagggttatacaagctaaaggaaaca 20826588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 28890058 - 28889978
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28890058 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 28896762 - 28896682
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28896762 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 28910010 - 28909930
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28910010 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 28931702 - 28931622
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28931702 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 28946405 - 28946325
Alignment:
Q  192 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28946405 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 313
Target Start/End: Complemental strand, 15121 - 14977
Alignment:
Q  180 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggtt 268  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||           | ||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacggtt 15022  T
Q  269 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  15021 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 1117 - 1261
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | |     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccct 1215  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    ||||||||||||||| | | | || ||||||||||||||| |||||    
T  1216 cttcgcttaagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 18712098 - 18712270
Alignment:
Q  147 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    |||||| |||||||| |||||| ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| |||||||||| ||    
T  18712098 tcccctagtgcacgaggcaaaagttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagt 18712196  T
Q  246 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 319  Q
      |||||| ||||||| | ||| ||||| ||||||||||| ||||||| |||  | ||||||||| || |||||    
T  18712197 tggggttccgctcgctaacggtacgcttaagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 18712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 272
Target Start/End: Original strand, 41111214 - 41111354
Alignment:
Q  132 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  41111214 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41111312  T
Q  232 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 272  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  41111313 agcttacagtaggttctgggttcagttcgcttacgggtcgct 41111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 21710167 - 21710292
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||| ||||||||| | |||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21710167 gtcccctagtgtacgaagcaaga-ttcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21710265  T
Q  246 ctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | ||||||| ||||||||    
T  21710266 ctgggttcagttcgcttatggttcgct 21710292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 19961472 - 19961622
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||| ||||||||||||||||||||| |||| ||||||  | | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19961472 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacgtaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19961569  T
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||||||||||||||||  ||||||||||||  | ||| || |||||||||||    
T  19961570 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgacc 19961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 22030504 - 22030333
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||||||||| || |||||||| |||||||||||| | | |  ||| ||||| |||||||||||| |||||| ||||||||||| |       
T  22030504 tatacaaaggttatacaagttgaaagaaacattatagaatgctcaaaaggatttcctagtgcaagaagcaaaaatt-aaaaagtggctgactaagacctt 22030406  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 268  Q
    ||||||||||||||  | | | || |||||||||| ||||||||||  ||  | |||||||||||| ||||||    
T  22030405 cttcgcttaagcgaaggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgctaagggtt 22030333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 20851838 - 20851714
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  20851838 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 20851741  T
Q  246 ctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | ||||||| || |||||    
T  20851740 ctgggttcagttcgcttatgggtcgct 20851714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 21705625 - 21705749
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21705625 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21705722  T
Q  246 ctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | ||||||| || |||||    
T  21705723 ctgggttcagttcgcttacgggtcgct 21705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 20858434 - 20858341
Alignment:
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20858434 aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20858341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 11157349 - 11157554
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| |||||||| ||||||||||||||||||  ||| ||||||||  || || |||||||| ||||   ||||  |||||||||  | |   |||| |    
T  11157349 tatatgttcacttggtttcatactcaatcatcttcaaa-ttcactaaactcgactaattcgattaccaaagtgtttcagtaggatttag-tgtatatata 11157446  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    ||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| || ||| ||||||||| || ||||||||| ||| |||||    
T  11157447 agggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggc-aaagttcaaaaagtggttgactaagg-tcatcttcg 11157544  T
Q  201 cttaagcgac 210  Q
    ||||||||||    
T  11157545 cttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 41111358 - 41111407
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 314  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  41111358 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 15835 - 15521
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| |||||||| ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   ||||  |||| ||||| | | | |||| |    
T  15835 tatatgttcacttggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgtttcagtatgattcag-tgcatatata 15738  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | ||||||||||||| || ||||||||||  ||||||||| | | || ||| |||||||| || ||| ||| ||||| |||||||||||| ||| |||||    
T  15737 aaggttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggc-aaagttc-aaaagtggctgactaagg-tcatcttcg 15641  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacg 300  Q
    |||||||||| | | |||| |||||||||||| |||| |||  || ||||||  | ||||| | ||||||||||||||||||||| ||| |||  ||| |    
T  15640 cttaagcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtttcgttcgctaacggttcgcttgagcgaacttctgacataatggaaatg 15541  T
Q  301 gtttttcgctcacaggttct 320  Q
     ||||||||| || ||||||    
T  15540 atttttcgcttacgggttct 15521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 35010 - 34861
Alignment:
Q  170 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 268  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||   ||||| ||||||| | ||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctcgctgacggtt 34912  T
Q  269 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 319  Q
    ||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  34911 cgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 147 - 306
Target Start/End: Complemental strand, 15633 - 15475
Alignment:
Q  147 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| |||||| ||    
T  15633 tcccctagtgcacgaggcaaat-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaaagt 15536  T
Q  246 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggttttt 306  Q
      |||||| ||||||| | |||||||||||||||||||||  |||||| |||| |||||||    
T  15535 tggggttccgctcgctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 306
Target Start/End: Complemental strand, 23328 - 23192
Alignment:
Q  170 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 268  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||| || ||||||| |||||| ||  ||||||  |||||| | ||||    
T  23328 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactcgctgacggtt 23230  T
Q  269 cgcttgagcgaacttctaacagaatcaaaacggttttt 306  Q
    |||||||||||||||||  |||||| |||| |||||||    
T  23229 cgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 1607 - 1813
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    |||||||||||||| ||||||||||| | || || ||||||||||||  |||||||| ||||| ||||   ||||| |||||||||| |     |||| |    
T  1607 tatatattcacttggtttcatactcactgatatccaaaattcactaaattcaaccaactcgattaccaatgtgttc-agtaggattcaggggtatatata 1705  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | ||| ||||||||| || ||||||||||| ||||||||| | | |||||| |||||||| || ||||||||||||| |||||||||||| ||| |||||    
T  1706 aaggtcatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaggc-aaaattcaaaaagtggctgactaagg-tcatcttcg 1803  T
Q  201 cttaagcgac 210  Q
    ||||||||||    
T  1804 cttaagcgac 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 6907 - 7024
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| | ||||||||||| || | ||  ||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgattcgcttgagcaaattcctggcagaatca 7006  T
Q  296 aaacggtttttcgctcac 313  Q
    ||| ||||  ||||||||    
T  7007 aaaaggttcctcgctcac 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 7604 - 7517
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctg 91  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |  | || |||||||||||||    
T  7604 tatatattcacttgatttcatactcaatcatctccaaaattcactaac-tcaactaattcgatcaccggagtattttagtaggattctg 7517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 4281 - 4153
Alignment:
Q  182 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 281  Q
    ||||||||||   ||||||||||||||||   |||||| ||||||||| | |||||||| | |||||||||||||||| ||| |||||||||||||||||    
T  4281 ctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcagcttacagtaagtctgggttctgctcgattacggttcgcttgagcgaac 4182  T
Q  282 ttctaacagaatcaaaacggtttttcgct 310  Q
    |  |  ||||||||||  |||||||||||    
T  4181 tcttggcagaatcaaattggtttttcgct 4153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 16083 - 16247
Alignment:
Q  110 tacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagc 207  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  16083 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagc 16180  T
Q  208 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    ||| | ||| || |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  16181 gacggttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 4377 - 4253
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| ||||    
T  4377 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggt 4280  T
Q  246 ctgggttctgctcgcttagggttcgct 272  Q
    |||||||| | ||||||| || |||||    
T  4279 ctgggttcagttcgcttacgggtcgct 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 3975 - 3871
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 269  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||   |||||||||||||||  ||| |||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtgagtctgggttctgctcaattacggttc 3876  T
Q  270 gcttg 274  Q
    |||||    
T  3875 gcttg 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 563 - 799
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  |||||||||| | | | |||| |    
T  563 tatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcagtaggattcag-tgcatatata 660  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |||||||||||| ||| |||||    
T  661 aaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcg 758  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
    |||||||||| | | |||| |||||||||||||||||||||    
T  759 cttaagcgacggctggttcgcttaagcgaccggcttacaga 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 17492 - 17643
Alignment:
Q  123 aaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcac 221  Q
    |||| ||||||||||||||| | | || ||| ||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||  | | | || |    
T  17492 aaaccttttagaatgctcaaaaggctcgcctagtgcacgaaacaaaa-ttcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgc 17590  T
Q  222 ttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 274  Q
    ||||||||||||||||||||| || ||||||  ||||||| |  |||||||||    
T  17591 ttaagcgaccggcttacagaaagtttgggtttcgctcgctcacagttcgcttg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 493800 - 493650
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| |||     
T  493800 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 493703  T
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  493702 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 493650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 525062 - 525205
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 194  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||| ||| |  | |||| ||||| ||| |||||  |||||| | ||||||| |||||      
T  525062 tatacaaaggttatacaagttgaaagaaacatttcagaatgctc-agatggattccctagtgcaggaaacaaaa--tcaaaatgtggctgaccaaggcct 525158  T
Q  195 acttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 241  Q
     ||||||||||||||  | | |||| |||||||||||| ||||||||    
T  525159 tcttcgcttaagcgaaggctggttcgcttaagcgaccgtcttacaga 525205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 24342 - 24178
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||| |||| |||||||||||||||| |||| |||||| || | ||  ||||| | | |||||| ||||||||||||||  |||| ||||    
T  24342 agtaggatt-tgatgcctacacaagggttatacaagctaaaagaaacacttaaaaacactcaaaagggtcccctagtgcacgaagcaaag-ttcagaaag 24245  T
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    || ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24244 agactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

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Target: scaffold0031 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 121200 - 121369
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 121298  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 266  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  121299 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 121369  T

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Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 132077 - 132246
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 132175  T
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 266  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  132176 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 132246  T

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Target: scaffold0020 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 282
Target Start/End: Complemental strand, 102766 - 102489
Alignment:
Q  3 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 102  Q
    ||||| |||||||| ||||||||||||||||||| ||| || |||||  ||||| |||||||| ||||   ||||   |||||| || | |   |||| |    
T  102766 tatatgttcacttggtttcatactcaatcatctccaaattt-actaaactcaactaattcgattaccaaggtgtttctgtaggactcag-tgtgtatata 102669  T
Q  103 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 200  Q
    | ||||||||| ||| || ||||| ||||| ||| ||||| | | |||||| |||||||| ||||   ||||||||| ||| |||||||| ||| |||||    
T  102668 aaggttatacaggttgaaagaaaccttttaaaatactcaaaaggatcccctagtgcacgaggcaagg-ttcaaaaagtggccgactaagg-tcatcttcg 102571  T
Q  201 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 282  Q
    |||||||||  | | |||| |||||||||||| ||||||||| ||  |||||| ||||||| | ||||||||||||||||||    
T  102570 cttaagcgatggctggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggttcgcttgagcgaact 102489  T

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Target: scaffold0232 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 19166 - 19059
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 195  Q
    ||||||| ||||||| ||||| || ||||||||||| ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||||||| | |     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgactaagaccct 19068  T
Q  196 cttcgctta 204  Q
    |||||||||    
T  19067 cttcgctta 19059  T

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Target: scaffold0034 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 72565 - 72747
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| | |||| ||||  || || || | | ||||||  ||||||||||||||||||| ||||    
T  72565 agtaggatt-tgatacttatacaagggttatataagctaaaaggaacactttaagatactaaaaagggtcccctaatgcacgaagcaaaaattcagaaag 72663  T
Q  179 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 263  Q
     |||||||| |||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||  ||||| ||||||||||    
T  72664 tggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttttgctcgctta 72747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 41236 - 41113
Alignment:
Q  196 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 295  Q
    |||||||||||||||   |||||| ||||||||| ||||| |||||||||  |||||| ||||||| |  ||||||||||||||||||| | ||||||      
T  41236 cttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgctgacagttcgcttgagcgaacttcaagcagaatgt 41137  T
Q  296 aaacggtttttcgctcacaggttc 319  Q
    ||| ||||||| ||| || |||||    
T  41136 aaatggttttttgcttacgggttc 41113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 51552 - 51657
Alignment:
Q  105 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 203  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| |||||| |||| ||||||||||||| ||||||||||| |   ||||||||    
T  51552 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagc-aaaattcaaaaagtggctgactaagaccttcttcgctt 51650  T
Q  204 aagcgac 210  Q
    |||||||    
T  51651 aagcgac 51657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 11782 - 11631
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 177  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||| | || | || | ||||| | | |||||| ||||| ||||||||  |||| | |    
T  11782 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaaaacttaaaaaatactcaaaagggtcccctagtgcatgaagcaaag-ttcagata 11685  T
Q  178 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    ||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11684 gaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 281
Target Start/End: Complemental strand, 3966 - 3831
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 245  Q
    ||||||| |||||||||||||   |||||||| ||||||||||| ||||| |||||||||||||  | ||| || ||||||||||| ||| ||| || ||    
T  3966 gtcccctagtgcacgaagcaagg-ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaagt 3868  T
Q  246 ctgggttct-gctcgcttagggttcgcttgagcgaac 281  Q
       ||| || ||||||| | |||||||||||||||||    
T  3867 tgaggtcctcgctcgctcacggttcgcttgagcgaac 3831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 11324 - 11196
Alignment:
Q  80 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 178  Q
    ||||||||| |||| |||||||||| |||||||||| ||||  ||||| || | | | ||||| | | |||||| |||||||||||||   |||| |||     
T  11324 agtaggatt-tgatgcctatacaagagttatacaagctaaaataaacacttaaaagtactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 11227  T
Q  179 aggctgactaaggctcacttcgcttaagcga 209  Q
    ||||||||||||||||| |||||||||||||    
T  11226 aggctgactaaggctcagttcgcttaagcga 11196  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  170 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 231  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 6299 - 6343
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctca 141  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||    
T  6299 tatacaaaggttatacaagttgaaagaaacattttagaatgctca 6343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 134867 - 134924
Alignment:
Q  215 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 272  Q
    ||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 134924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 134820 - 134882
Alignment:
Q  146 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 210  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| ||||||||||||||    
T  134820 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgac 134882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 1391 - 1343
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    |||||||||||||||||||   ||||||||||||  |||||||||||||    
T  1391 ggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 3372 - 3328
Alignment:
Q  97 tatacaagggttatacaagttaaaggaaacattttagaatgctca 141  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||    
T  3372 tatacaaaggttatacaagttgaaagaaacatttcagaatgctca 3328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 49597 - 49645
Alignment:
Q  265 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 313  Q
    |||||| ||||||||||||   |||||||||||| ||||||||||||||    
T  49597 ggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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