View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_31 (Length: 305)
Name: NF20194_low_31
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 14960440 - 14960153
Alignment:
| Q |
11 |
gaaggagcaaaggtcatgttcattttcatggtacataaaaaagaaacttcaaatagtgttaccaagtaaatatgtccataagtaagttagttagccaact |
110 |
Q |
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| T |
14960440 |
gaagaagcaaaggtcatgttcattttcatggtacataaaaaagaaacttcaaatagtgttaccaagtaaatatgtccataagtaagttag----ccaact |
14960345 |
T |
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| Q |
111 |
gcagtactcatgattgggaaccat--------gaattgattgctctcagaacaacaatgaaccataaaccaagtatgctgaataaagctacaaagaccac |
202 |
Q |
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| T |
14960344 |
gcagtactcatgattgggaaccattcaaccatgaattgattgctctcagaacaacaatgaaccataaaccaagtatgctgaataaagctacaaagaccac |
14960245 |
T |
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| Q |
203 |
tattgatacaataaccactgtatctgcaaacaacaacagtaacagatgnnnnnnnnnttaaattatggtgtgcaaaattctatcttgttcat |
294 |
Q |
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| T |
14960244 |
tattgaaacaataaccactgtatctgcaaacaacaacagtaacagatgaaaaaaaaattaaattatggtgtgcaaaattctatcttgttcat |
14960153 |
T |
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