View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_low_36 (Length: 277)

Name: NF20194_low_36

Description: NF20194

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20194_low_36

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 165; E-Value: 3e-88

Query Start/End: Original strand, 81 - 261

Target Start/End: Complemental strand, 25624642 - 25624462

Alignment:

Q	81	gactaattattcacatttccaataatcggtttctccataaaatagttaacaattaagtgaatgtttaggtcaatgtttaccaaacatgcacgattgtaac	180	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	25624642	gactaatcattcacatttccaataatcggtttctccataaaatagttaacaattaagtgaatgtttaggtcaatgtttaccaaacatgcacgtttgtaac	25624543	T

Q	181	agtgagtttagcaaaataactatgacaccatgattctattaaaactccttagtgtagcttttgctaaaagcactacggctc	261	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25624542	ggtgagtttagcgaaataactatgacaccatgattctattaaaactccttagtgtagcttttgctaaaagcactacggctc	25624462	T

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Target: chr7; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 1 - 37

Target Start/End: Complemental strand, 25624722 - 25624686

Alignment:

Q	1	caactgctgcttccaaccccatctggttagtcaatct	37	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25624722	caactgctgcttccaaccccatctggttagtcaatct	25624686	T

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