View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_39 (Length: 258)
Name: NF20194_low_39
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 31128152 - 31127937
Alignment:
| Q |
18 |
atataaagcatcacatattccattacagaaacctacatcggatacaccagttctatatgaaataagtaaaaacacatgcctgaaaacagatcatagcaca |
117 |
Q |
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| T |
31128152 |
atataaagcatcacatattccattacagaaacctacattggatacaccagttctat--gaaataagtaaaaacacatgcct-------------agcaca |
31128068 |
T |
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| Q |
118 |
gattgaaataatttccattaaataataaaagtcataattttattcttaatttagacgagaaatgtaaactacaaaattacctacacaaccttagtttatg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31128067 |
gattgatataatttccattaaataataaaagtcataattttattcttaatttagacgagaaatgtaaactacaaaattacctacacaaccttagtttatg |
31127968 |
T |
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| Q |
218 |
cataaaataagatttcattcatctgtgctgc |
248 |
Q |
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|||||||||||||||||||||| |||||||| |
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| T |
31127967 |
cataaaataagatttcattcatttgtgctgc |
31127937 |
T |
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