View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20194_low_4 (Length: 730)

Name: NF20194_low_4
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20194_low_4
NF20194_low_4
[»] chr5 (6 HSPs)
chr5 (65-174)||(42993139-42993248)
chr5 (12-73)||(42992205-42992266)
chr5 (124-172)||(18153432-18153480)
chr5 (126-174)||(43589162-43589210)
chr5 (22-174)||(32402190-32402342)
chr5 (126-174)||(7495257-7495305)
[»] chr4 (7 HSPs)
chr4 (22-174)||(55511902-55512055)
chr4 (126-175)||(53664211-53664260)
chr4 (126-174)||(20681722-20681770)
chr4 (126-170)||(50710417-50710461)
chr4 (134-174)||(53665094-53665134)
chr4 (125-174)||(23574616-23574665)
chr4 (141-174)||(31912331-31912364)
[»] chr6 (5 HSPs)
chr6 (22-174)||(20687464-20687617)
chr6 (19-175)||(19063659-19063816)
chr6 (133-175)||(10607351-10607393)
chr6 (133-174)||(34716165-34716206)
chr6 (133-174)||(20689063-20689104)
[»] chr8 (8 HSPs)
chr8 (35-174)||(42638148-42638288)
chr8 (126-174)||(33802373-33802421)
chr8 (126-176)||(33801497-33801547)
chr8 (126-174)||(38686303-38686351)
chr8 (126-169)||(38687055-38687098)
chr8 (126-169)||(32551108-32551151)
chr8 (133-179)||(34364733-34364779)
chr8 (133-174)||(42639167-42639208)
[»] chr3 (4 HSPs)
chr3 (112-174)||(35432207-35432269)
chr3 (36-174)||(7359752-7359890)
chr3 (124-174)||(44406197-44406247)
chr3 (133-171)||(35431335-35431373)
[»] chr2 (7 HSPs)
chr2 (127-174)||(26893482-26893529)
chr2 (127-174)||(26898921-26898968)
chr2 (125-174)||(6851912-6851961)
chr2 (126-175)||(6852809-6852858)
chr2 (126-174)||(8536886-8536934)
chr2 (126-174)||(26487845-26487893)
chr2 (126-174)||(8536132-8536185)
[»] chr1 (6 HSPs)
chr1 (126-176)||(50354996-50355046)
chr1 (126-174)||(38618230-38618278)
chr1 (125-174)||(24976718-24976767)
chr1 (124-174)||(29334945-29334995)
chr1 (125-174)||(51976264-51976313)
chr1 (126-174)||(51610221-51610269)
[»] chr7 (8 HSPs)
chr7 (126-174)||(34852557-34852605)
chr7 (124-174)||(42344212-42344262)
chr7 (124-177)||(5004185-5004238)
chr7 (125-174)||(46814246-46814295)
chr7 (124-175)||(30916494-30916545)
chr7 (126-176)||(34853334-34853384)
chr7 (214-256)||(31276957-31276999)
chr7 (133-174)||(42343296-42343337)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 42993139 - 42993248
Alignment:
Q  65 ttaattttattgttattttaattttgacatgttatgacagccacatgtccactaaaagtagactttcccatggtgggaaagaattccttctacccaccct 164  Q
    ||||||||||||||||||||||| |||| |||||| || |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  42993139 ttaattttattgttattttaattatgacctgttataactgccacatgtctactaaaagtagacttttccatggtgggatagaattccttctacccaccct 42993238  T
Q  165 aaatgccacc 174  Q
    ||||||||||    
T  42993239 aaatgccacc 42993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 42992205 - 42992266
Alignment:
Q  12 acagaagcagaaagcaattaggaggtgtagaatcaagtattaaaataagctaattaatttta 73  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  42992205 acagaagcagaaagcaattggaaggtgtagaatcaagtattaaaatatgctaattaatttta 42992266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 18153432 - 18153480
Alignment:
Q  124 agactttcccatggtgggaaagaattccttctacccaccctaaatgcca 172  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  18153432 agactttcccatggtggaaaagaattcctcctacccaccctaaatgcca 18153480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 43589162 - 43589210
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  43589162 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 43589210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 32402342 - 32402190
Alignment:
Q  22 aaagcaattaggaggtgtagaatcaa-gtattaaaataagctaattaattttattgttattttaattttgacatgttatgacagccacatgtccactaaa 120  Q
    ||||||| | ||||||||| || ||| ||||||||||||||||||| |||||||| || | ||| |  |||  || ||  || ||||| ||| ||||| |    
T  32402342 aaagcaaatgggaggtgtaaaagcaatgtattaaaataagctaattgattttattattttcttagtaatgatctgctaa-actgccacctgtacactaca 32402244  T
Q  121 agtagactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||| |||||||||||||||||||||  ||||| |||||||| ||||||| ||||    
T  32402243 agtggactttcccatggtgggaaagtcttcctcctacccactctaaatggcacc 32402190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 7495257 - 7495305
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||| |||||||||||||||||||  |||||||||||||||| ||||    
T  7495257 actttctcatggtgggaaagaattccccctacccaccctaaatgtcacc 7495305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 55512055 - 55511902
Alignment:
Q  22 aaagcaattaggaggtgtagaatcaa-gtattaaaataagctaattaattttattgttattttaattttgacatgttatgacagccacatgtccactaaa 120  Q
    ||||||| | |||||||||||| ||| ||||||||||||||||||| |||||||| || ||||| || |||| ||||| ||| ||||| ||||||||| |    
T  55512055 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattatttttttagttctgacctgttaagactgccacctgtccactaca 55511956  T
Q  121 agtagactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||| |||||||| |||||||||||| |||||| ||||| |||||||||||||||    
T  55511955 agtggactttcctatggtgggaaagtattcctcctacctaccctaaatgccacc 55511902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 53664260 - 53664211
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccaccg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53664260 actttcccatggtgggaaagaattccttctacccaccctaaataccaccg 53664211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 20681770 - 20681722
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  20681770 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 20681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 50710417 - 50710461
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgc 170  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  50710417 actttcccatggtgggaaagaattccttctacccaccttaaatgc 50710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 53665094 - 53665134
Alignment:
Q  134 atggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53665094 atggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 23574616 - 23574665
Alignment:
Q  125 gactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  23574616 gacttttccatggtgggaaagaattcctcctatccaccctaaatgccacc 23574665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 31912331 - 31912364
Alignment:
Q  141 gaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||||||||||||||||||| |||||    
T  31912331 gaaagaattccttctacccaccctaaataccacc 31912364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 20687617 - 20687464
Alignment:
Q  22 aaagcaattaggaggtgtagaatcaa-gtattaaaataagctaattaattttattgttattttaattttgacatgttatgacagccacatgtccactaaa 120  Q
    ||||||| | |||||||||||| ||| ||||||||||||||||| | |||||||| || ||||| || |||| ||||| ||| ||||| ||||||||| |    
T  20687617 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaactgattttattatttttttagttctgacctgttaagactgccacctgtccactaca 20687518  T
Q  121 agtagactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||| |||||||| |||||||||||| |||||| ||||| |||||||||||||||    
T  20687517 agtggactttcctatggtgggaaagtattcctcctacctaccctaaatgccacc 20687464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 19063816 - 19063659
Alignment:
Q  19 cagaaagcaattaggaggtgtagaatcaa-gtattaaaataagctaattaattttattgttattttaattttgacatgttatgacagccacatgtccact 117  Q
    |||||||||| | |||||||||||| ||| ||||||||||||||||||| |||||||| || ||||| |  |||| || ||| || ||| | ||||||||    
T  19063816 cagaaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattatttttttagtaatgacctgctataactgccgcctgtccact 19063717  T
Q  118 aaaagtagactttcccatggtgggaaagaattccttctacccaccctaaatgccaccg 175  Q
    | ||||  ||||||||||||| |||||| |||||| |||||||||| |||||||||||    
T  19063716 acaagtgaactttcccatggttggaaagtattcctcctacccacccaaaatgccaccg 19063659  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 10607351 - 10607393
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgccaccg 175  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  10607351 catggtgggaaagtattccctctacccaccctaaatgccaccg 10607393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 34716206 - 34716165
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  34716206 catggtgggaaagtattccctctacccaccctaaatgccacc 34716165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 20689063 - 20689104
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||| |||||| |||||| |||||||||||||||||||||    
T  20689063 catggtaggaaagtattcctcctacccaccctaaatgccacc 20689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 42638288 - 42638148
Alignment:
Q  35 ggtgtagaatcaagt-attaaaataagctaattaattttattgttattttaattttgacatgttatgacagccacatgtccactaaaagtagactttccc 133  Q
    ||||||||| ||||| ||||||||||| |||||||||||||| || ||||||  ||||| |||| | || ||||  | || | |||||| |||||||| |    
T  42638288 ggtgtagaagcaagtcattaaaataagataattaattttattatttttttaagcttgacctgttttaacggccatctatctaataaaaggagactttctc 42638189  T
Q  134 atggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  42638188 atggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 33802373 - 33802421
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33802373 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 33801547 - 33801497
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccaccgt 176  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33801547 acttttccatggtgggaaagaattccttctacccaccctaaatgccaccgt 33801497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 38686351 - 38686303
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38686351 actttcccatggtggaaaagaattccttctacccaccctaaatgccacc 38686303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 38687055 - 38687098
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatg 169  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  38687055 actttcccattgtgggaaagaattccttctacccaccctaaatg 38687098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 32551108 - 32551151
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatg 169  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  32551108 actttcctatgatgggaaagaattccttctacccaccctaaatg 32551151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 34364779 - 34364733
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgccaccgtaaa 179  Q
    ||||||||||||| ||||| |  ||||||||||||||||||||||||    
T  34364779 catggtgggaaagtattccattgacccaccctaaatgccaccgtaaa 34364733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 42639167 - 42639208
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||| |||| ||||| ||||||||||||||||||||||    
T  42639167 catggtggaaaagtattccctctacccaccctaaatgccacc 42639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 35432207 - 35432269
Alignment:
Q  112 tccactaaaagtagactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35432207 tccactacaagtggacttttccatggtgggaaagaattccttctacccaccctaaatgccacc 35432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 7359752 - 7359890
Alignment:
Q  36 gtgtagaatcaa-gtattaaaataagctaattaattttattgttattttaattttgacatgttatgacagccacatgtccactaaaagtagactttccca 134  Q
    |||||||| ||| ||||||||||||| ||||| |||||||  || |||||||  |||| || ||  || ||||| ||||||||  |||| ||||||||||    
T  7359752 gtgtagaagcaatgtattaaaataagttaattgattttataatttttttaataatgacctgctaa-actgccacctgtccactgcaagtggactttccca 7359850  T
Q  135 tggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||  |||||  ||||||||||||||||||||    
T  7359851 tggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 44406247 - 44406197
Alignment:
Q  124 agactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  44406247 agacttttccatggtgggaaagaattcttcctacccaccctaaatgccacc 44406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 35431373 - 35431335
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgcc 171  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  35431373 catggtgggaaagtattcctcctacccaccctaaatgcc 35431335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 26893529 - 26893482
Alignment:
Q  127 ctttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26893529 ctttcccatggtgggaaagaattccttctacccaccctaaatgccacc 26893482  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 26898968 - 26898921
Alignment:
Q  127 ctttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26898968 ctttcccatggtgggaaagaattccttctacccaccctaaatgccacc 26898921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 6851961 - 6851912
Alignment:
Q  125 gactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  6851961 gactttcccatgatgggaaagaattcctcctacccaccctaaatgccacc 6851912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 6852809 - 6852858
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccaccg 175  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6852809 actttcctatggtgggaaagaattcctcctacccaccctaaatgccaccg 6852858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 8536886 - 8536934
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  8536886 acttttccatggtaggaaagaattccttctacccaccctaaatgccacc 8536934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 26487845 - 26487893
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  26487845 actttctcatggtaggaaagaattcctcctacccaccctaaatgccacc 26487893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 8536185 - 8536132
Alignment:
Q  126 actttcccatggtgggaaagaattcct-----tctacccaccctaaatgccacc 174  Q
    ||||||||||||||| |||||||||||     ||||||||||||||||||||||    
T  8536185 actttcccatggtggaaaagaattccttctattctacccaccctaaatgccacc 8536132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 50354996 - 50355046
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccaccgt 176  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50354996 actttcccatggtgggaaagaattcctcctacccaccctaaatgccaccgt 50355046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 38618278 - 38618230
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38618278 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 38618230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 24976718 - 24976767
Alignment:
Q  125 gactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  24976718 gactttcccatggtggaaaagaattcctcctacccaccctaaatgccacc 24976767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 29334945 - 29334995
Alignment:
Q  124 agactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  29334945 agactttcccatggtgggaaataattcctcctacccaccctaaatgacacc 29334995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 51976313 - 51976264
Alignment:
Q  125 gactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  51976313 gacttttccatggtggaaaagaattcctcctacccaccctaaatgccacc 51976264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 51610221 - 51610269
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  51610221 actttcccatggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 34852605 - 34852557
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34852605 actttcccatggtggaaaagaattccttctacccaccctaaatgccacc 34852557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 42344212 - 42344262
Alignment:
Q  124 agactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  42344212 agacttttctatggtgggaaagaattcctcctacccaccctaaatgccacc 42344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 5004238 - 5004185
Alignment:
Q  124 agactttcccatggtgggaaagaattccttctacccaccctaaatgccaccgta 177  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||    
T  5004238 agactttcccatggtggaaaagaattcctcctacccatcctaaatgtcaccgta 5004185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 46814246 - 46814295
Alignment:
Q  125 gactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  46814246 gactttcccatggtgggaaagaattcctcctacccatcctaaataccacc 46814295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 30916494 - 30916545
Alignment:
Q  124 agactttcccatggtgggaaagaattccttctacccaccctaaatgccaccg 175  Q
    ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||    
T  30916494 agacttttccatgatgggaaagaattcttcctacccaccctaaatgccaccg 30916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 34853334 - 34853384
Alignment:
Q  126 actttcccatggtgggaaagaattccttctacccaccctaaatgccaccgt 176  Q
    ||||||| ||||||||||||  ||||| |||||||||||||||||||||||    
T  34853334 actttcctatggtgggaaagtcttcctcctacccaccctaaatgccaccgt 34853384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 31276957 - 31276999
Alignment:
Q  214 tttcccatgatgggaaagttgatctatccaccattgatatatt 256  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  31276957 tttcccatgatgggaaagttgatgtttcaaccattgatatatt 31276999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 42343337 - 42343296
Alignment:
Q  133 catggtgggaaagaattccttctacccaccctaaatgccacc 174  Q
    |||||| |||||| |||||| |||||||||||||||||||||    
T  42343337 catggtaggaaagtattcctcctacccaccctaaatgccacc 42343296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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