View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_40 (Length: 257)
Name: NF20194_low_40
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 23853519 - 23853398
Alignment:
| Q |
116 |
tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaattacatagataccaataaaataaggtaagaagaagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853519 |
tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaattacatagataccaataaaataaggtaagaagaagag |
23853420 |
T |
|
| Q |
216 |
gacatcaacatagataccaatt |
237 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
23853419 |
gacatcaacatagataccaatt |
23853398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23853634 - 23853583
Alignment:
| Q |
1 |
attttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853634 |
attttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
23853583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44630668 - 44630617
Alignment:
| Q |
1 |
attttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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|
| T |
44630668 |
attttcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc |
44630617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 28603966 - 28604013
Alignment:
| Q |
5 |
tcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
28603966 |
tcaatcttatcataacgaacataacctaaaattatgggaagtgatatc |
28604013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29351103 - 29351154
Alignment:
| Q |
1 |
attttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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|
| T |
29351103 |
attttcaatcttatcacaacaaacataatctaaaattatgagaagtgatatc |
29351154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 12260856 - 12260903
Alignment:
| Q |
5 |
tcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||||||||| |
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|
| T |
12260856 |
tcaatcttatcacaaccaacataagctaaaattatgagaagtgatatc |
12260903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 13313528 - 13313484
Alignment:
| Q |
8 |
atcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||||||| |
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|
| T |
13313528 |
atcttatcacaaccaacataaactaaaattatgtgaagtgatatc |
13313484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15973600 - 15973650
Alignment:
| Q |
1 |
attttcaatcttatcataaacaacataaactaaaattatgagaagtgatat |
51 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||||||| ||||| |||| |
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|
| T |
15973600 |
attttcagtcttatcacaaccaacataaactaaaattatgggaagttatat |
15973650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 16948881 - 16948928
Alignment:
| Q |
5 |
tcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||| ||||||| |
|
|
| T |
16948881 |
tcaatcttatcataaccaacataagctaaaattatgggaaatgatatc |
16948928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 19102846 - 19102893
Alignment:
| Q |
5 |
tcaatcttatcataaacaacataaactaaaattatgagaagtgatatc |
52 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||||||||||||| |
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|
| T |
19102846 |
tcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc |
19102893 |
T |
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