View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_44 (Length: 248)
Name: NF20194_low_44
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 38232178 - 38231973
Alignment:
| Q |
17 |
gaactctgttgtattgattatggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa--cattagaaaacaatgaatgatgaggcactgaagaaa |
114 |
Q |
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| T |
38232178 |
gaactctgttgtattgattatggtggaatagtaaaacttcaaataggaagtgacgatgaaaagacattagaaaacaatgaatgatgaggcactgaagaaa |
38232079 |
T |
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| Q |
115 |
cccgctaaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacactacagttcttttgcagaaaattaataagat |
214 |
Q |
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| T |
38232078 |
cccgctaaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttag----------cagttcttttgcagaaaattaataagat |
38231989 |
T |
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| Q |
215 |
gtcatgatatacatat |
230 |
Q |
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|||||||||||||||| |
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| T |
38231988 |
gtcatgatatacatat |
38231973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 38225860 - 38225701
Alignment:
| Q |
29 |
attgattatggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa--cattagaaaacaatgaatgatgaggcactgaagaaacccgctaaagga |
126 |
Q |
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||||||| | ||| ||||||||||||||||||||||| |||| ||||||| || |||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
38225860 |
attgattctagtggaatagtaaaacttcaaataggaaatgacaatgaaaaggcaatagagaacaatgaatgatgaggtactgaagaaacccgttaaagga |
38225761 |
T |
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| Q |
127 |
atctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacacta |
186 |
Q |
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| T |
38225760 |
atcctctattgtttttggtcttctagtggatatagcaaattcctttttagtgttacacta |
38225701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 35706485 - 35706300
Alignment:
| Q |
12 |
caaaggaactctgttgtattgattatggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa---cattagaaaacaatgaatgatgaggcactg |
108 |
Q |
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||||||||| || || |||||||| || | |||||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||| | || |
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| T |
35706485 |
caaaggaaccctattatattgattctgattgaatagtaaaacttcaaataggaagtgacaatgaataagacatttgaaaacaaggaatgatgaggtaatg |
35706386 |
T |
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| Q |
109 |
aagaaacccgctaaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacactacagttctt |
194 |
Q |
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| T |
35706385 |
aagaaaccggctaaaggaatcccttattgtttttggtcttctagtggatatagcaggtttctttttggtgttacactacagttctt |
35706300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 9828700 - 9828540
Alignment:
| Q |
37 |
tggtgaaatagtaaaacttcaaataggaagtgacgatgaaaa--cattagaaaacaatgaatgatgaggcactgaagaaacccgctaaaggaatctctta |
134 |
Q |
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||||| ||| ||||||||| |||||||||||||| ||||||| || |||||||||| ||| ||| ||| | ||||||||| | || ||||||| |||| |
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| T |
9828700 |
tggtggaattgtaaaactttaaataggaagtgacaatgaaaaggcaatagaaaacaaggaacgataaggtagtgaagaaactggttagaggaatccctta |
9828601 |
T |
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| Q |
135 |
ttgt-ttttggtcttctagtggatatagtaggttcctttttagcattacactacagttctt |
194 |
Q |
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|| | |||| | |||||||| || |||| ||||||||||||||| ||||| ||||| |||| |
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| T |
9828600 |
ttttattttaggcttctagtagaaataggaggttcctttttagcgttacattacagctctt |
9828540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 10457450 - 10457523
Alignment:
| Q |
121 |
aaaggaatctcttattgtttttggtcttctagtggatatagtaggttcctttttagcattacactacagttctt |
194 |
Q |
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|||| |||| ||||||||||||||||||| ||| |||||||||| |||| |||||| |||||||| |||||||| |
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| T |
10457450 |
aaagaaatcccttattgtttttggtcttcaagttgatatagtagattcccttttagtattacactgcagttctt |
10457523 |
T |
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