View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20194_low_50 (Length: 203)
Name: NF20194_low_50
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 5014367 - 5014542
Alignment:
| Q |
15 |
gatgaatttgacccacagagatggccttcgtcttcttttcattaatccctccacatgaatttgaggcgagattcttattcacatgctccaaactttcatc |
114 |
Q |
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| T |
5014367 |
gatgaatctggcccacagagatggccttcgtcttcttttcattaatccctccacatgaatttgaggcgagattcttattcacatgctccaaactttcatc |
5014466 |
T |
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| Q |
115 |
gaatcatcttcaacattcatcaattcattttcaacattcatgggttccactcttctttgaaacaaaacccagaaac |
190 |
Q |
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| T |
5014467 |
gaatcatcttcaacattcatcaattcattttcaacattcatgggttccactcttctttgaaacaaaacccaaaaac |
5014542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 6572151 - 6571976
Alignment:
| Q |
14 |
agatgaatttgacccacagagatggccttcgtcttcttttcattaatccctccacatgaatttgaggcgagattcttattcacatgctccaaactttcat |
113 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6572151 |
agatgaatctgacccacatagatggccttcgtcttcttttcattaatccctccacatgaatttgaggcgagattcttattcacatgctccaaactttcat |
6572052 |
T |
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| Q |
114 |
cgaatcatcttcaacattcatcaattcattttcaacattcatgggttccactcttctttgaaacaaaacccagaaac |
190 |
Q |
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| T |
6572051 |
cgaatcatcttcaacattcatcaattcattttcaacggtcatggg-tccactcttctttgaaacaaaacccagaaac |
6571976 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 40873766 - 40873589
Alignment:
| Q |
14 |
agatgaatttgacccacagagatggccttcgtcttcttttcattaatccctccacatgaatttgaggc-gagattcttattcacatgctccaaactttca |
112 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40873766 |
agatgaatctgacccacagagatgaccttcgtcttcttttcattaatccctccacatgaatttgagggtgagattcttattcacatgctccaaactttca |
40873667 |
T |
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| Q |
113 |
tcgaatcatcttcaacattcatcaattcattttcaacattcatgggttccactcttctttgaaacaaaacccagaaac |
190 |
Q |
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| T |
40873666 |
tcgaatcaccttcaacattcatcaattcattttcaacattcatgggttccgctcttctttgaaacaatacccaaaaac |
40873589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 52034874 - 52034754
Alignment:
| Q |
14 |
agatgaatttgacccacagagatggccttcgtcttcttttcattaatccctccacatgaatttgaggcgagattcttattcacatgctccaaactttcat |
113 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52034874 |
agatgaatctgacccacagagatggccttcgtcttcttttcattaatccctccacatgaatttgaggcgagattcttatttacatgctccaaactttcat |
52034775 |
T |
|
| Q |
114 |
cgaatcatcttcaacattcat |
134 |
Q |
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|
|||||||| |||||||||||| |
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| T |
52034774 |
cgaatcattttcaacattcat |
52034754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 52034770 - 52034730
Alignment:
| Q |
139 |
tcattttcaacattcatgggttccactcttctttgaaacaa |
179 |
Q |
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| T |
52034770 |
tcattttcaacattcatgggttccactcttctttgaaacaa |
52034730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 46170766 - 46170856
Alignment:
| Q |
52 |
ttcattaatccctccacatgaatttgaggcgagattcttattcacat-gctccaaactttcatcgaatcatcttcaacattcatcaattcat |
142 |
Q |
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||||||||||||| |||||||||||| || ||| ||||||||||||| ||||| | | ||||| |||||||||||||||| |||||||||| |
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| T |
46170766 |
ttcattaatcccttcacatgaatttgtggtgagtttcttattcacatggctcc-agccttcattaaatcatcttcaacatttatcaattcat |
46170856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 22777924 - 22778016
Alignment:
| Q |
50 |
ttttcattaatccctccacatgaatttgaggcgagattcttattcacat-gctccaaactttcatcgaatcatcttcaacattcatcaattcat |
142 |
Q |
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||||||||||||||| |||||||||||| || ||| ||||||||||||| ||||| | | |||||| |||||||||||||||| |||||||||| |
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| T |
22777924 |
ttttcattaatcccttcacatgaatttgtggtgagtttcttattcacatggctcc-agccttcatcaaatcatcttcaacatttatcaattcat |
22778016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 1532153 - 1532063
Alignment:
| Q |
52 |
ttcattaatccctccacatgaatttgaggcgagattcttattcacat-gctccaaactttcatcgaatcatcttcaacattcatcaattcat |
142 |
Q |
| |
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||||||||||||| |||||||||||| || ||| ||||||||||||| ||||| ||| |||||| |||||||| ||||||| |||||||||| |
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| T |
1532153 |
ttcattaatcccttcacatgaatttgtggtgagtttcttattcacatggctcc-aaccttcatcaaatcatctacaacatttatcaattcat |
1532063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 37627926 - 37628016
Alignment:
| Q |
52 |
ttcattaatccctccacatgaatttgaggcgagattcttattcacat-gctccaaactttcatcgaatcatcttcaacattcatcaattcat |
142 |
Q |
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||||||||||||| |||||||||||| || ||| ||||||||||||| ||||| | |||||| |||||||||||||||| |||||||||| |
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| T |
37627926 |
ttcattaatcccttcacatgaatttgtggtgagtttcttattcacatggctcc-ggccttcatcaaatcatcttcaacatttatcaattcat |
37628016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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