View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20194_low_6 (Length: 646)
Name: NF20194_low_6
Description: NF20194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20194_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Complemental strand, 46552240 - 46551600
Alignment:
| Q |
1 |
tagatgtttgccagcattatcaggccattgtgtgggtttatgattgatttcaaaatgctaccaactcaagaattttatttatcaactcattaaatcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46552240 |
tagatgtttgccagcattatcaggccattgtgtgggcttatgattgatttcaaaatgctaccaactcaagaattttatttatcaactcattaaatcatat |
46552141 |
T |
|
| Q |
101 |
aatcccaaagtgaaaatttcaaataaaaagaggggtaggatataaaatgcaagaaatagcgaacattgaattcaattatgtaagtaatataggcatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46552140 |
aatcccaaagtgaaaatttcaaataaaaagaggggtaggatataaaatgcaagaaatagcgaacattgaattcaattatgtaagtaatataggcatgttt |
46552041 |
T |
|
| Q |
201 |
tgtaattttgatatagtgatagtg---------------ccaaaatgacaatttactcattatgtaattatctctcaaatgactttaaaaggaaagtcaa |
285 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46552040 |
tgtaattttgatatagtgatagtgactcacattcaagggccaaaatgacaatttactcattatgtaattatctctaaaatgactttaaaaggaaagtcaa |
46551941 |
T |
|
| Q |
286 |
acaaacatacagcatcttgcctcaaagaaataccgccgaggtgaagcagaagctacatccatagtcagttccacataagtttttaattttacgggtattc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46551940 |
acaaacatacagcatcttgcctcaaagaaataccgccgaggtgaagcagaagctacatccatagtcagttccacataagtttttaattttacgggtattc |
46551841 |
T |
|
| Q |
386 |
tagagccatgtccattgcaatcatccattcctctaggactaacctgaaaattaggggatttcttattagaaaagattatacaagcacttccatcaaacaa |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46551840 |
tagagccatgtccattgcaatcatccattcctctaggactaacctgaaaattaggggatttcttattagaaaagattatacaagcacttccatcaaacaa |
46551741 |
T |
|
| Q |
486 |
aagtatgaatctaataaaaaatatctatgctttattttgacnnnnnnntgtcaatgctgttgagttcaaggcatgtactattaaactcaaaattttgaac |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
46551740 |
aagtatgaatctaataaaaaatatctatgctttattttgacaaaaaaatgtcaatgctgttgagttcgaggcatgtactattaaactc--aattttgaac |
46551643 |
T |
|
| Q |
586 |
acaaaatctggaaaatatggctactaataattattcaagtata |
628 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46551642 |
acaaaatctggaaaatatggctactgataattattcaagtata |
46551600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 224 - 628
Target Start/End: Complemental strand, 1028542 - 1028139
Alignment:
| Q |
224 |
gccaaaatgacaatttactcattatgtaattatctctcaaatgactttaaaaggaaagtcaaacaaacatacagcatcttgcctcaaagaaataccgccg |
323 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028542 |
gccaaaatgacaatttactcgttatgtaattatctctaaaatgactttaaaaggaaagtcaaacaaacatacagcatcttgcctcaaagaaataccgccg |
1028443 |
T |
|
| Q |
324 |
aggtgaagcagaagctacatccatagtcagttccacataagtttttaattttacgggtattctagagccatgtccattgcaatcatccattcctctagga |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1028442 |
aggtgaagcagaagctacatccatagtcagttccacaaaagtttttaattgtatgggtattctagagccatgtccattgcaatcatccgttcctctagga |
1028343 |
T |
|
| Q |
424 |
ctaacctgaaaattaggggatttcttattagaaaagattatacaagcacttccatcaaacaaaagtatgaatctaataaaaaatatctatgctttatttt |
523 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028342 |
ctaatctgaaaatcaggggatttcttataagaaaatattatacaggcacttcaatcaaacaaaagtatgaatctaataaaaaatatctatgctttatttt |
1028243 |
T |
|
| Q |
524 |
gacnnnnnnntgtcaatgctgttgagttcaaggcatgtactattaaactcaaaattttgaacacaaaatctggaaaatatggctactaataattattcaa |
623 |
Q |
| |
|
||| | || ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
1028242 |
gacaaaaaaat-tcgatgctgttgagttgaaggcatgtactattaaactcaaaagtttgaacacaaaatttggaaaatatggctcctaataattattcaa |
1028144 |
T |
|
| Q |
624 |
gtata |
628 |
Q |
| |
|
||||| |
|
|
| T |
1028143 |
gtata |
1028139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1028793 - 1028581
Alignment:
| Q |
1 |
tagatgtttgccagcattatcaggccattgtgtgggtttatgattgatttcaaaatgctaccaactcaagaattttatttatcaactcattaaatcatat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
1028793 |
tagatgtttgccagcactatcaggccattgtgtgggtttaggattgatttcacaatgctaccaactcaagcattttatttattaactcattaaatcatat |
1028694 |
T |
|
| Q |
101 |
aatcccaaagtgaaaatttcaaataaaaagaggggtaggatataaaatgcaagaaatagcgaacattgaattcaattatgtaagtaatataggcatgttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1028693 |
aatcccaaagtgaaaatttcaaataaaaagaagggtaggatataaaatgcaagaaatagcgaacattgaattcaattatgtacgtaatttaggcatgttt |
1028594 |
T |
|
| Q |
201 |
tgtaattttgata |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1028593 |
tgtaattttgata |
1028581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 225 - 449
Target Start/End: Complemental strand, 40831168 - 40830949
Alignment:
| Q |
225 |
ccaaaatgacaatttactcattatgtaattatctctcaaatgactt--taaaaggaaagtcaaacaaacatacagcatcttgcctcaaagaaataccgcc |
322 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
40831168 |
ccaaaatgataatttactcattatgtaattatctctaaaatgccagaataaaaggaaagttaaaca----tacagcatcttgcctcgaagaaataccgcc |
40831073 |
T |
|
| Q |
323 |
gaggtgaagcagaagctacatccatagtcagttccacataagtttttaattttacgggtattctagagccatgtccattgcaatcatccattcctctagg |
422 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||| ||||| |||||||||| || ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
40831072 |
gaggggaagctgaagctacatccatagtcaattccacaaaagttcttaattttacaggcattctagagccatgtccattgca---atccattcctttagg |
40830976 |
T |
|
| Q |
423 |
actaacctgaaaattaggggatttctt |
449 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
40830975 |
actaacctgaaatataggggatttctt |
40830949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University