View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20195_high_1 (Length: 656)
Name: NF20195_high_1
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 16003614 - 16003858
Alignment:
| Q |
5 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
104 |
Q |
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| T |
16003614 |
gaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaa |
16003713 |
T |
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| Q |
105 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
204 |
Q |
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| T |
16003714 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
16003813 |
T |
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| Q |
205 |
aaaagacagctagagaacaaaagaagaagagggtgtttacgtttg |
249 |
Q |
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| T |
16003814 |
aaaagacagctagagaataaaagaagaagagggtgtttacgtttg |
16003858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 26794994 - 26795241
Alignment:
| Q |
5 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
104 |
Q |
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| T |
26794994 |
gaggaacacataaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
26795093 |
T |
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| Q |
105 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
204 |
Q |
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| T |
26795094 |
aggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaacagctgtagaaaagcatggga |
26795193 |
T |
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| Q |
205 |
aaaagacagctagagaacaa---aagaagaagagggtgtttacgtttg |
249 |
Q |
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| T |
26795194 |
aaaagacagctagagaacaaaagaagaagaagagggtgtttacgtttg |
26795241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 438 - 637
Target Start/End: Original strand, 16004683 - 16004882
Alignment:
| Q |
438 |
tcatatttaagctgtaacattcaaatatttcatgaattgagtttgattgtagttggaagcaacggcagcaggaggtgtgttccccgggcacccgcgcact |
537 |
Q |
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| T |
16004683 |
tcatatttaagctgtaacattcaaatatttcatgaattgagtttgattgtagttggaagcaacggcggcaggaggtgtgttcccagggcacccgcgcact |
16004782 |
T |
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| Q |
538 |
tgacaaggagcacctttcaccattacgcaaacacatgtttcgtataatattggaccaccaggatgacgacaatagtaatggatttcacctatgccaacat |
637 |
Q |
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| T |
16004783 |
tgacaaggagcacctttcaccattacgcaaacacatgtttcgtataatattggaccaccaggatgacgacaatagtagtggatttcacctatgccaacat |
16004882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 247 - 442
Target Start/End: Original strand, 16004408 - 16004601
Alignment:
| Q |
247 |
ttgcagacactttccttctcttatgtgcgcagtttgtagaaaggtttgttaagaagaaatgttannnnnnnnnnnnnnngaaaggaaaaagaagaagaca |
346 |
Q |
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| T |
16004408 |
ttgcagacacttttcttcttttatgtgc--agtttgtagaaaggtttgtcaagaagacatgttattttttaatttttttgaaaggaaaaagaagaagaca |
16004505 |
T |
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| Q |
347 |
ttttatgctatgtacttatgttgcgtacatgaaaattcttatacatcaatattacaataaagcatcatgcatatatcctcagcacaaaaactcata |
442 |
Q |
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| T |
16004506 |
ttttatgttatgtacttatgttgtgtacatgaaaatttttatacatcaatattacaataaagcatcatgcatatatcctcagcacaaaaactcata |
16004601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 40721968 - 40722202
Alignment:
| Q |
15 |
gaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
114 |
Q |
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||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40721968 |
gaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
40722067 |
T |
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| Q |
115 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagc |
214 |
Q |
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| T |
40722068 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagc |
40722167 |
T |
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| Q |
215 |
tagagaacaaaagaagaagagggtgtttacgtttg |
249 |
Q |
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| T |
40722168 |
tagagaacaaaagaagaagagggtgtttacgtttg |
40722202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 27222063 - 27221880
Alignment:
| Q |
66 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
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| Q |
166 |
ccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagctagagaacaaaagaagaagagggtgtttacgtttg |
249 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27221963 |
ccatatttatggtggtaagagctgcagaaaagcatgggaaaaagacagctagagaacaaaagaagaagaggttgtttacgtttg |
27221880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 442 - 634
Target Start/End: Original strand, 48818849 - 48819047
Alignment:
| Q |
442 |
atttaagctgtaacattcaaatatttcatgaattgagtttgattgtagttggaagcaacg------gcagcaggaggtgtgttccccgggcacccgcgca |
535 |
Q |
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||||||| |||||||||||||||||||||||| |||| || | ||||||||| |||| | ||||||||||||||||||||||| || || || | |
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| T |
48818849 |
atttaagttgtaacattcaaatatttcatgaaatgaggttcagtgtagttggcagcagcaaaggcagcagcaggaggtgtgttccccggacatccacgaa |
48818948 |
T |
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| Q |
536 |
cttgacaaggagcacctttcaccattacgcaaacacatgtttcgtataatattggaccaccaggatgacgacaatagtaatggatttcacctatgccaa |
634 |
Q |
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||||||| |||||||| ||||||||| | |||||||||||||||||||| ||||||| | | | ||||||||||||||| | || || ||||||||||| |
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| T |
48818949 |
cttgacagggagcaccgttcaccatttcacaaacacatgtttcgtataacattggactagcggcatgacgacaatagtagttgacttgacctatgccaa |
48819047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 27222875 - 27222822
Alignment:
| Q |
12 |
acagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaata |
65 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27222875 |
acagaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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