View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20195_high_13 (Length: 240)

Name: NF20195_high_13
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20195_high_13
NF20195_high_13
[»] chr1 (12 HSPs)
chr1 (15-197)||(2387568-2387752)
chr1 (21-226)||(31542333-31542535)
chr1 (15-224)||(13471109-13471319)
chr1 (13-226)||(6202644-6202852)
chr1 (30-226)||(19371187-19371373)
chr1 (13-218)||(35071973-35072172)
chr1 (30-226)||(1958215-1958408)
chr1 (33-207)||(22430331-22430499)
chr1 (171-218)||(31554545-31554592)
chr1 (118-226)||(2341269-2341377)
chr1 (30-226)||(14817773-14817961)
chr1 (12-48)||(31554693-31554729)
[»] chr3 (32 HSPs)
chr3 (11-226)||(8203029-8203247)
chr3 (37-226)||(9552558-9552743)
chr3 (21-226)||(41000673-41000875)
chr3 (21-226)||(41009455-41009657)
chr3 (34-226)||(3242851-3243038)
chr3 (13-226)||(15622841-15623048)
chr3 (21-199)||(17928234-17928402)
chr3 (12-218)||(25265933-25266133)
chr3 (12-218)||(10720205-10720419)
chr3 (13-218)||(14885296-14885496)
chr3 (118-226)||(6196797-6196904)
chr3 (118-226)||(12557439-12557546)
chr3 (13-226)||(14420683-14420895)
chr3 (40-226)||(33568249-33568434)
chr3 (13-226)||(8608567-8608777)
chr3 (40-226)||(13109295-13109477)
chr3 (13-218)||(23285619-23285820)
chr3 (30-219)||(70539-70719)
chr3 (137-226)||(11183830-11183918)
chr3 (114-213)||(27881433-27881533)
chr3 (30-207)||(12477030-12477201)
chr3 (13-226)||(30093337-30093545)
chr3 (118-219)||(8618852-8618951)
chr3 (122-219)||(15534830-15534925)
chr3 (171-218)||(15682786-15682833)
chr3 (30-81)||(20438469-20438520)
chr3 (30-81)||(41435634-41435685)
chr3 (168-219)||(46398313-46398363)
chr3 (13-194)||(8806765-8806939)
chr3 (12-112)||(15682657-15682756)
chr3 (167-226)||(21610174-21610234)
chr3 (121-158)||(15682752-15682789)
[»] chr2 (15 HSPs)
chr2 (12-226)||(25494231-25494446)
chr2 (21-226)||(35141002-35141203)
chr2 (12-197)||(15950526-15950713)
chr2 (71-226)||(30691445-30691600)
chr2 (71-226)||(42572072-42572227)
chr2 (15-193)||(24287996-24288173)
chr2 (12-218)||(16275824-16276038)
chr2 (12-218)||(3763937-3764155)
chr2 (117-207)||(21112415-21112506)
chr2 (40-226)||(20278583-20278763)
chr2 (15-201)||(21857594-21857781)
chr2 (13-79)||(24692648-24692714)
chr2 (13-79)||(24701488-24701554)
chr2 (13-80)||(19990239-19990304)
chr2 (11-97)||(21113768-21113853)
[»] chr5 (30 HSPs)
chr5 (21-226)||(24962783-24962984)
chr5 (67-226)||(23638472-23638629)
chr5 (71-226)||(23834263-23834417)
chr5 (71-226)||(20378882-20379036)
chr5 (70-201)||(28846342-28846472)
chr5 (30-226)||(26871429-26871620)
chr5 (13-226)||(29895486-29895693)
chr5 (12-218)||(33842830-33843048)
chr5 (106-218)||(12178670-12178784)
chr5 (118-219)||(21690966-21691066)
chr5 (40-226)||(36450638-36450822)
chr5 (106-218)||(11811523-11811637)
chr5 (124-201)||(21993951-21994029)
chr5 (106-218)||(26087439-26087553)
chr5 (33-226)||(22956645-22956831)
chr5 (12-67)||(11811406-11811461)
chr5 (127-226)||(20097245-20097343)
chr5 (12-67)||(26087329-26087384)
chr5 (12-67)||(27231634-27231689)
chr5 (16-157)||(21865929-21866072)
chr5 (30-75)||(7259635-7259680)
chr5 (118-219)||(7789218-7789317)
chr5 (118-219)||(12393203-12393302)
chr5 (13-226)||(25528582-25528787)
chr5 (30-81)||(34464017-34464068)
chr5 (30-98)||(20097162-20097232)
chr5 (118-219)||(1800523-1800622)
chr5 (15-67)||(12178564-12178617)
chr5 (106-153)||(27231742-27231789)
chr5 (15-56)||(21993849-21993890)
[»] chr6 (19 HSPs)
chr6 (34-226)||(28270242-28270433)
chr6 (34-226)||(28305211-28305402)
chr6 (34-226)||(28348992-28349183)
chr6 (21-226)||(25503991-25504196)
chr6 (12-218)||(16636545-16636747)
chr6 (13-226)||(27071744-27071956)
chr6 (71-166)||(16582077-16582172)
chr6 (71-166)||(16613208-16613303)
chr6 (30-226)||(20456935-20457128)
chr6 (33-226)||(22326277-22326463)
chr6 (13-226)||(22776680-22776887)
chr6 (106-218)||(27056395-27056509)
chr6 (12-67)||(27056273-27056328)
chr6 (118-226)||(620912-621019)
chr6 (30-226)||(19716050-19716240)
chr6 (118-226)||(27512351-27512456)
chr6 (168-219)||(16822828-16822878)
chr6 (168-219)||(20045692-20045742)
chr6 (13-98)||(18946910-18946993)
[»] scaffold0389 (1 HSPs)
scaffold0389 (12-218)||(2105-2307)
[»] chr7 (20 HSPs)
chr7 (15-218)||(29024536-29024739)
chr7 (11-226)||(4949683-4949897)
chr7 (30-226)||(12586765-12586954)
chr7 (11-197)||(13833898-13834088)
chr7 (114-226)||(27436388-27436500)
chr7 (30-215)||(840565-840745)
chr7 (30-215)||(847741-847921)
chr7 (30-215)||(1205745-1205925)
chr7 (49-226)||(4829883-4830057)
chr7 (12-202)||(567174-567369)
chr7 (12-218)||(27974215-27974429)
chr7 (12-218)||(5207096-5207314)
chr7 (13-226)||(34136591-34136798)
chr7 (106-223)||(1959563-1959672)
chr7 (118-226)||(13268329-13268436)
chr7 (118-226)||(8812845-8812952)
chr7 (30-113)||(803204-803286)
chr7 (30-78)||(16292071-16292119)
chr7 (160-226)||(16270392-16270458)
chr7 (167-226)||(23884583-23884643)
[»] scaffold0044 (1 HSPs)
scaffold0044 (15-226)||(74106-74320)
[»] chr8 (10 HSPs)
chr8 (16-197)||(17680424-17680603)
chr8 (12-197)||(39843077-39843258)
chr8 (15-226)||(6666120-6666332)
chr8 (109-226)||(24709083-24709200)
chr8 (30-226)||(20736115-20736306)
chr8 (30-226)||(20744673-20744864)
chr8 (30-219)||(32002160-32002343)
chr8 (40-226)||(22160632-22160813)
chr8 (13-226)||(25856752-25856959)
chr8 (30-226)||(20741157-20741348)
[»] chr4 (17 HSPs)
chr4 (71-201)||(8100622-8100751)
chr4 (15-192)||(21529142-21529327)
chr4 (13-226)||(20556301-20556509)
chr4 (107-226)||(3359618-3359738)
chr4 (30-218)||(3386040-3386223)
chr4 (13-219)||(9187233-9187437)
chr4 (35-226)||(14883931-14884117)
chr4 (30-218)||(22706380-22706564)
chr4 (13-98)||(14919866-14919951)
chr4 (118-226)||(15077298-15077406)
chr4 (118-226)||(15079604-15079712)
chr4 (118-226)||(18038665-18038770)
chr4 (171-218)||(26218314-26218361)
chr4 (132-226)||(15900529-15900622)
chr4 (30-75)||(16725697-16725743)
chr4 (12-50)||(26218187-26218225)
chr4 (30-98)||(3841585-3841653)
[»] scaffold0605 (1 HSPs)
scaffold0605 (15-205)||(6748-6934)
[»] scaffold0023 (1 HSPs)
scaffold0023 (15-197)||(144307-144487)
[»] scaffold0357 (1 HSPs)
scaffold0357 (13-226)||(8710-8922)
[»] scaffold0551 (2 HSPs)
scaffold0551 (13-226)||(4922-5132)
scaffold0551 (13-98)||(11036-11121)
[»] scaffold0104 (1 HSPs)
scaffold0104 (13-226)||(37069-37278)
[»] scaffold0582 (1 HSPs)
scaffold0582 (30-226)||(4831-5023)
[»] scaffold0132 (1 HSPs)
scaffold0132 (34-226)||(31262-31449)
[»] scaffold0056 (1 HSPs)
scaffold0056 (71-197)||(12377-12503)
[»] scaffold0001 (1 HSPs)
scaffold0001 (13-226)||(99004-99211)
[»] scaffold0364 (1 HSPs)
scaffold0364 (34-218)||(1-180)
[»] scaffold0202 (1 HSPs)
scaffold0202 (35-226)||(25286-25473)
[»] scaffold0600 (1 HSPs)
scaffold0600 (13-219)||(8379-8582)
[»] scaffold0306 (1 HSPs)
scaffold0306 (40-226)||(18030-18210)
[»] scaffold0478 (1 HSPs)
scaffold0478 (30-226)||(7-200)
[»] scaffold0327 (1 HSPs)
scaffold0327 (34-226)||(17428-17617)
[»] scaffold0320 (1 HSPs)
scaffold0320 (13-212)||(3832-4025)
[»] scaffold0068 (1 HSPs)
scaffold0068 (118-219)||(22844-22944)
[»] scaffold0004 (1 HSPs)
scaffold0004 (48-226)||(192215-192389)
[»] scaffold2162 (2 HSPs)
scaffold2162 (106-218)||(270-384)
scaffold2162 (12-67)||(451-506)
[»] scaffold0393 (1 HSPs)
scaffold0393 (118-226)||(3875-3983)
[»] scaffold0125 (1 HSPs)
scaffold0125 (30-157)||(11649-11773)
[»] scaffold0435 (1 HSPs)
scaffold0435 (30-69)||(14281-14320)
[»] scaffold0138 (1 HSPs)
scaffold0138 (167-226)||(10541-10599)
[»] scaffold0019 (2 HSPs)
scaffold0019 (136-226)||(19390-19479)
scaffold0019 (33-69)||(18494-18530)
[»] scaffold0183 (1 HSPs)
scaffold0183 (166-226)||(30824-30884)
[»] scaffold0782 (1 HSPs)
scaffold0782 (30-113)||(5853-5937)
[»] scaffold0005 (1 HSPs)
scaffold0005 (118-226)||(301343-301450)
[»] scaffold0243 (1 HSPs)
scaffold0243 (132-218)||(16926-17012)
[»] scaffold0014 (1 HSPs)
scaffold0014 (30-69)||(184178-184217)
[»] scaffold0084 (1 HSPs)
scaffold0084 (167-226)||(33920-33979)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 2387752 - 2387568
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaa-tttttatttttgaagaacttatcaaagttaatttataaacatt 113  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||| | || ||||||||||||||| ||||||| |||||||||| ||||||||    
T  2387752 gactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatatataaatttttatttttgaaggacttatcgaagttaatttctaaacatt 2387653  T
Q  114 gtagaggaacatggtttca-tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa 197  Q
    ||||||||||||||||||| |||||| |||||||||   ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  2387652 gtagaggaacatggtttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaagctaagaacgaaaccaaggaaa 2387568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 31542535 - 31542333
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagagg 120  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||  |||||||||| ||||    
T  31542535 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttt-tttttgaaggacttatcaaagtgaattg-taaacattgtcgagg 31542438  T
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagt 220  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||| ||||||||||| |||||||||||||||||||||| || |||||||||| ||| |     
T  31542437 aacatagtttcatttgaaaattgtaaagatattgcaataggttc-tttttcaaaagttaagaacgaaaccaaggaaaaacttcttaacaaaagctaaggc 31542339  T
Q  221 ttagtt 226  Q
    ||||||    
T  31542338 ttagtt 31542333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 13471319 - 13471109
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattg 114  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||| ||  | ||||||| |    
T  13471319 gactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacatttttttttttttaaggacttgtcaaagtgaa-atgtaaacatgg 13471221  T
Q  115 tagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-tttaacaaaa 212  Q
     || |||||||||||||||||||||||||||||| ||||| |||  ||||  ||||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  13471220 cagcggaacatggtttcatttgaaaattgtaaagatattgacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaagttctttaacagaa 13471121  T
Q  213 gttaaagtttag 224  Q
    ||||||| ||||    
T  13471120 gttaaagcttag 13471109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 6202644 - 6202852
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| |||| ||||||| | | || ||   |    
T  6202644 cagacttgaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacatttttt-tatttgaaggacttgtcaaagtaattgtagaa---t 6202739  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
    ||   |||||||| |||| |||||||| |||| ||| | |||| |  |||||  |||||||||| ||||||||||||||||||||||||| |||||||||    
T  6202740 tgataaggaacattgttttatttgaaatttgtgaagatgttgctattggttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaa 6202838  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  6202839 gctaaagcttagtt 6202852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 19371373 - 19371187
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagaca-atttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggt 128  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||| | || ||||||| | ||| ||||||||||||| || |||||     
T  19371373 atgcaaaatggtgcatgatatgcttatgcaaaaatagacacatttttttttttgaaggatttgtcaaagtga-tttgtaaacattgtagaagagcatgga 19371275  T
Q  129 ttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
     | |||||||         ||||||||||||||||| || |||||| | ||||||||||| ||||||||||||| |||||||||||| ||| ||||||    
T  19371274 cttatttgaa---------ggtattgcaaacggttccttcttcaaa-gataagaacgaaatcaaggaaaaagttcttaacaaaagttgaagcttagtt 19371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 35072172 - 35071973
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| |||||||||||| ||||| ||||  ||| |||| ||||||| |  || ||||| |    
T  35072172 cagacttgaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacactttttttttt--aaggacttgtcaaagtaa--ttgtaaactt 35072077  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| ||||||||||||  ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||    
T  35072076 gata-aggaacattgttttatttgaaaattgagaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaa 35071979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 1958408 - 1958215
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaa-tagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggt 128  Q
    |||| ||||||||||||||||||| || |||||| ||||||  |||| ||||||||| |||| ||||||| |  || ||||| ||| | |||||||| ||    
T  1958408 atgctaaatgatgcatgatatgctaatgcaaaaaatagacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaac-ttgaaaaggaacattgt 1958313  T
Q  129 ttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    || ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||| ||||||    
T  1958312 tttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagtt 1958215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 22430499 - 22430331
Alignment:
Q  33 caaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttca 132  Q
    |||||||||||||| ||||||||| |||||||||||| ||||  ||||||||| |||| |||||||  |  | ||||| |||   |||||||| |||| |    
T  22430499 caaaatgatgcatggtatgcttatgcaaaaatagacactttt--tttttgaaggacttgtcaaagt--aactgtaaac-ttgataaggaacattgtttta 22430405  T
Q  133 tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaa 207  Q
    |||||||||||| ||| | ||||||  |||||  ||||||||| | |||||||||| ||||||||||||| ||||    
T  22430404 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gcaagaacgaaatcaaggaaaaagttcttaa 22430331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 31554592 - 31554545
Alignment:
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  31554592 caaaaggtaagatcaaaaccaaggaaaaagttcttaacaaaagttaaa 31554545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 2341269 - 2341377
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagg-aaaaagtttttaacaaaagtta 216  Q
    |||||||| |||| ||||||||||||| ||| | ||||||  || ||  |||||| || ||||||| |||||||||| |||||||| |||||||||| ||    
T  2341269 aggaacattgttttatttgaaaattgtgaagatgttgcaattggatcccttttcataa-gtaagaatgaaaccaaggaaaaaagttcttaacaaaagcta 2341367  T
Q  217 aagtttagtt 226  Q
    ||| ||||||    
T  2341368 aagcttagtt 2341377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 14817773 - 14817961
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagaca-atttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggt 128  Q
    ||||||||||||||||| ||||||||| ||||||||| || |||||| ||| ||||  |||| |||||||  | || ||||| |||   | |||||| ||    
T  14817773 atgcaaaatgatgcatgctatgcttatgcaaaaatagccacatttttttttctgaacgacttgtcaaagt--aattgtaaac-ttgataatgaacattgt 14817869  T
Q  129 ttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    || ||||||||||||| ||| | ||||||   ||||  ||||||||| |||     ||||||||||||||||||  ||||||||| ||||| ||||||    
T  14817870 tttatttgaaaattgtgaagatgttgcaatttgttcccttttcaaaa-gta-----gaaaccaaggaaaaagttcataacaaaagctaaagcttagtt 14817961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 31554729 - 31554693
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgat 48  Q
    ||||||||||||||||  |||||||||||||||||||    
T  31554729 acagactagaaactatgaatgcaaaatgatgcatgat 31554693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 8203029 - 8203247
Alignment:
Q  11 cacagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt--gaagaacttatcaaagttaatttataa 108  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||||  ||||||||| ||||   |||| | ||| |||| |||||||||||    
T  8203029 cacagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatgtacaattttttttttatcgaaggatttaccaaacttaatttataa 8203128  T
Q  109 acattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaa- 207  Q
    ||||| || |||||||||| ||||||| |||||||||||| ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||     
T  8203129 acattttaaaggaacatggattcattttaaaattgtaaagatattgcaataggttcttttttcaaaaggtaagaatgaaaccaaggaaaaagttcttaat 8203228  T
Q  208 caaaagttaaagtttagtt 226  Q
    |||||| ||||| ||||||    
T  8203229 caaaagctaaagcttagtt 8203247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 37 - 226
Target Start/End: Original strand, 9552558 - 9552743
Alignment:
Q  37 atgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttg 136  Q
    |||||||||||||||||||| |||||||||| |||||||  |||||||| |||||||||||| ||||  |||||||||||||||||||| ||||||||||    
T  9552558 atgatgcatgatatgcttatgcaaaaatagataattttt--ttttgaaggacttatcaaagtgaattg-taaacattgtagaggaacatagtttcatttg 9552654  T
Q  137 aaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||||| ||||||||  ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  9552655 aaaattgtaaagatattgcaataggttc-tttttcaaaagttaagaactaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 9552743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 41000875 - 41000673
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagagg 120  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||  |||||||||| ||||    
T  41000875 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttt-tttttgaaggacttatcaaagtgaattg-taaacattgtcgagg 41000778  T
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagt 220  Q
    ||||| |||||||||||||||||||||| ||||| ||  ||||| ||||||||||| |||||||||||||||||||||| || |||||||||| ||| |     
T  41000777 aacatagtttcatttgaaaattgtaaagatattggaataggttc-tttttcaaaagttaagaacgaaaccaaggaaaaacttcttaacaaaagctaaggc 41000679  T
Q  221 ttagtt 226  Q
    ||||||    
T  41000678 ttagtt 41000673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 41009657 - 41009455
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagagg 120  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||  |||||||||| ||||    
T  41009657 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttt-tttttgaaggacttatcaaagtgaattg-taaacattgtcgagg 41009560  T
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagt 220  Q
    ||||| |||||||||||||||||||||| ||||| ||  ||||| ||||||||||| |||||||||||||||||||||| || |||||||||| ||| |     
T  41009559 aacatagtttcatttgaaaattgtaaagatattggaataggttc-tttttcaaaagttaagaacgaaaccaaggaaaaacttcttaacaaaagctaaggc 41009461  T
Q  221 ttagtt 226  Q
    ||||||    
T  41009460 ttagtt 41009455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 3242851 - 3243038
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcat 133  Q
    |||| ||||||||||||| |||| ||||||| ||||||||||   |||||||  ||| | ||||||||||  ||||||||| | ||||||||||||| ||    
T  3242851 aaaacgatgcatgatatgtttatgcaaaaatggacaattttt---tttgaagggcttgttaaagttaattg-taaacattgcataggaacatggttttat 3242946  T
Q  134 ttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||||||||| |||||||| ||||||  ||||||||| | ||||| ||| |||||||| ||||| ||||||||||  |||| ||||||    
T  3242947 ttgaaaattgtaaagatattgcaatcggttccattttcaaaa-gcaagaaagaagccaaggaagaagttcttaacaaaagcaaaagcttagtt 3243038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 15623048 - 15622841
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |    
T  15623048 cagacttgaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaactt 15622952  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  15622951 gata-aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaagg-aaaagttcttaacaaaa 15622855  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  15622854 gctaaagcttagtt 15622841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 17928402 - 17928234
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagagg 120  Q
    |||||||  ||||||||||||||||||||||||||| ||||||     ||||||| ||||||||| ||||||||||| |||       |||| | |||||    
T  17928402 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaagg---aatttttttttttgaaggacttatcaaaggtaa-------acatggcagagg 17928313  T
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaa 199  Q
    |||||||||||||||||||||||||||| ||||||||   |||   |||||| ||||||||||||||||||||||||||    
T  17928312 aacatggtttcatttgaaaattgtaaagatattgcaatatgtttccttttcacaaggtaagaacgaaaccaaggaaaaa 17928234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 25266133 - 25265933
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaaca 111  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||       | ||||||||| |||| | ||||| || |  ||||||    
T  25266133 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga-------tttttttgaaggacttgttaaagtgaaatg-taaaca 25266042  T
Q  112 ttgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-tttaaca 209  Q
    | | ||||||| ||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| ||||| |||||||    
T  25266041 tggcagaggaatatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaagttctttaaca 25265942  T
Q  210 aaagttaaa 218  Q
     ||| ||||    
T  25265941 taagctaaa 25265933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 10720205 - 10720419
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-------gaagaacttatcaaagttaattt 104  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||   ||||| |||||       |||| |||| | ||||| || |     
T  10720205 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagatttttttttttttttttttttgaaggacttgttaaagtgaaatg 10720304  T
Q  105 ataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt- 202  Q
     ||||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| |||||     
T  10720305 -taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaagttc 10720403  T
Q  203 tttaacaaaagttaaa 218  Q
    ||||||| ||| ||||    
T  10720404 tttaacataagctaaa 10720419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 14885296 - 14885496
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |    
T  14885296 cagacttgaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaactt 14885392  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||  | || | ||||||||||| ||| | ||||||  ||||| |||| ||||| |||||||||||||||||||||||||| |||||||||    
T  14885393 gata-aggaacaatgctttacttgaaaattgtgaagatgttgcaattggttcctttt-caaaaagtaagaacgaaaccaaggaaaaagttcttaacaaaa 14885490  T
Q  213 gttaaa 218  Q
    | ||||    
T  14885491 gataaa 14885496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 6196904 - 6196797
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| ||||||||||||| ||| | ||||||  |||||  |||||||||| ||||||||||||||||||||||||| |||||||||| |||    
T  6196904 aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaa 6196806  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  6196805 agcttagtt 6196797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 12557546 - 12557439
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| ||||||||||||| ||| ||||||||  |||||  |||||||||| |||||||||||| |||||||||||| |||||||||| |||    
T  12557546 aggaacattgtttaatttgaaaattgtgaagatattgcaattggttcccttttcaaaag-taagaacgaaactaaggaaaaagttcttaacaaaagctaa 12557448  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  12557447 agcttagtt 12557439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 14420895 - 14420683
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaat-ttttatttttgaagaacttatcaaagttaatttataaaca 111  Q
    |||||| |||| |||  ||| ||||||||||||| ||||||||| |||||||| ||| | |||| ||||||||| |||| ||||||| |  || |||||     
T  14420895 cagacttgaaattatgaatgaaaaatgatgcatgctatgcttatgcaaaaataaacactcttttttttttgaaggacttgtcaaagtaa--ttgtaaact 14420798  T
Q  112 ttgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaa 210  Q
    |  || || ||||| |||| ||||||||||||| ||| | |||| |  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  14420797 tgata-agtaacattgttttatttgaaaattgtgaagatgttgctattggttcccttttcaaaaagtaagaacgaaaccaaggaaaaaagttcttaacaa 14420699  T
Q  211 aagttaaagtttagtt 226  Q
    ||| ||||| ||||||    
T  14420698 aagctaaagcttagtt 14420683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 33568434 - 33568249
Alignment:
Q  40 atgcatgatatgcttatacaaaaatagacaatttttattttt---gaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttg 136  Q
    ||||||| ||||||||| |||||||||||| ||||| |||||   |||| |||| ||||||| |  || ||||| |  || |||||||| |||| |||||    
T  33568434 atgcatgctatgcttatgcaaaaatagacacttttttttttttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttatttg 33568338  T
Q  137 aaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||| ||||| ||||||    
T  33568337 aaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagtt 33568249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 8608777 - 8608567
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||| ||||||||||||| ||||||||| ||||||||||||  |||| ||||||| | ||| ||||||||  | || ||||| |    
T  8608777 cagacttgaaattatgtatgtaaaatgatgcatgctatgcttatgcaaaaatagacacattttttttttgagggactcatcaaagt--aattgtaaac-t 8608681  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaa 211  Q
    ||  ||||||||| ||||  ||||||| |||| ||| | ||||||  |||||  ||||||||| ||||||| ||||||||||| ||||||| ||||||||    
T  8608680 tgatgaggaacattgttttgtttgaaacttgtgaagatgttgcaattggttcccttttcaaaa-gtaagaatgaaaccaaggataaaagttcttaacaaa 8608582  T
Q  212 agttaaagtttagtt 226  Q
    || ||||| ||||||    
T  8608581 agctaaagcttagtt 8608567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 13109295 - 13109477
Alignment:
Q  40 atgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaa 139  Q
    ||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||||||||    
T  13109295 atgcatgctatgcttatgcaaaaatagacacattttttttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttatttgaaa 13109391  T
Q  140 attgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||| ||| | ||||||  |||||  |||||||||| ||| ||| |||||||||||||| || |||||||||| ||||| ||||||    
T  13109392 attgtgaagatgttgcaattggttcccttttcaaaag-taaaaacaaaaccaaggaaaaaattcttaacaaaagctaaagcttagtt 13109477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 23285619 - 23285820
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| |||||||| |||  |||| ||||| ||| |||| |||||||  | || ||||| |    
T  23285619 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaataaacacatttttttttttaaggacttgtcaaagt--aattgtaaac-t 23285715  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
    ||   |||||| | |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||| ||||||||||||||| || || ||||||    
T  23285716 tgataaggaaccttgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaatgaaaccaaggaaaaaattctttacaaaa 23285814  T
Q  213 gttaaa 218  Q
    | ||||    
T  23285815 gctaaa 23285820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 70719 - 70539
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||    |||||| |||| ||||||| |  || ||||| |  || |||||||| |||    
T  70719 atgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt----ttgaaggacttgtcaaagtca--ttgtaaacttgata-aggaacattgtt 70627  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaag 219  Q
    | ||||||||||||| ||  | ||||||  |||||  |||||||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  70626 ttatttgaaaattgtgaaaatgttgcaattggttcccttttcaaaag-taagaacgaaaccaagg-aaaagttcttaacaaaagctaaag 70539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 11183918 - 11183830
Alignment:
Q  137 aaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||| ||||||||||||||| ||||   | |||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  11183918 aaaattataaaggtattgcaaatggttacctcttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 11183830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 27881533 - 27881433
Alignment:
Q  114 gtagaggaacatggtttcatttgaaaat-tgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
    ||||| |||||||||||||||||||||| ||||| | |||||| | ||||||| ||||||||||||||||| |||||||| | | ||||| | |||||||    
T  27881533 gtagatgaacatggtttcatttgaaaatctgtaaggatattgcgatcggttctattttcaaaaggtaagaatgaaaccaatggagaagttctcaacaaaa 27881434  T
Q  213 g 213  Q
    |    
T  27881433 g 27881433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 12477030 - 12477201
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||  ||| |||| |||| ||||||| |  || ||||| |  || |||||||| |||    
T  12477030 atgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt--tttggaaggacttgtcaaagtca--ttgtaaacttgata-aggaacattgtt 12477124  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaa 207  Q
    | ||||||||||||| ||| |  |||||  |||||  |||||||||| ||||||||| ||||||||||||||| ||||    
T  12477125 ttatttgaaaattgtgaagatgctgcaattggttcccttttcaaaag-taagaacgagaccaaggaaaaagttcttaa 12477201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 30093337 - 30093545
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||  ||||||||| ||||||||||||  |||  ||||||||| |||| |||||||  | || ||||| |    
T  30093337 cagacttgaaattatgtatgcaaaatgatgcatcctatgcttatgcaaaaatagacacattt--tttttgaaggacttgtcaaagt--aattgtaaac-t 30093431  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaa 211  Q
    ||   |||||||| |||| || |  ||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||| |||    
T  30093432 tgataaggaacattgttttatctttaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggataaaagttcttaagaaa 30093530  T
Q  212 agttaaagtttagtt 226  Q
    || ||||| ||||||    
T  30093531 agctaaagcttagtt 30093545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 8618951 - 8618852
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||| ||||||||||||   ||||||  |||||   |||||||| |||||||||||||||||||||||||| |||||||||| |||    
T  8618951 aggaacattgttttatttaaaaattgtaaagacgttgcaattggttc-cctttcaaaa-gtaagaacgaaaccaaggaaaaagttcttaacaaaagctaa 8618854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 15534830 - 15534925
Alignment:
Q  122 acatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaag 219  Q
    |||| |||| |||| |||||||||||| | ||||||  |||||  ||| |||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  15534830 acattgttttatttaaaaattgtaaagatgttgcaattggttcccttt-caaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaag 15534925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 15682786 - 15682833
Alignment:
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  15682786 caaaaggtaagatcaaaaccaaggaaaaagttcttaacaaaagttaaa 15682833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 20438520 - 20438469
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt 81  Q
    |||||| |||||||||||||||||||| ||||||||||||  ||||||||||    
T  20438520 atgcaagatgatgcatgatatgcttatgcaaaaatagacacattttattttt 20438469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 41435685 - 41435634
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt 81  Q
    |||||| |||||||||||||||||||| ||||||||||||  ||||||||||    
T  41435685 atgcaagatgatgcatgatatgcttatgcaaaaatagacacattttattttt 41435634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 46398313 - 46398363
Alignment:
Q  168 tttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaag 219  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  46398313 tttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaag 46398363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 8806939 - 8806765
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  |||||||||||||||||  |||||||| ||||||||||||  ||||   ||||||| |||| | ||||| |  || ||||| |    
T  8806939 cagactggaaattatgaatgcaaaatgatgcatgtcatgcttatgcaaaaatagacacatttt---tttgaaggacttgttaaagtaa--ttgtaaactt 8806845  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagg 194  Q
      || |||||||| |||| ||||||||||||| ||| | || |||  |||||  ||||||||| ||||||||||||||||||    
T  8806844 gata-aggaacattgttttatttgaaaattgtgaagatgttccaattggttcccttttcaaaa-gtaagaacgaaaccaagg 8806765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 15682657 - 15682756
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaaca 111  Q
    ||||||||||||||||  |||||||||||||||||||||   ||| ||||||| |    ||||| ||||||||| ||| |||||||||| ||| ||||||    
T  15682657 acagactagaaactatgaatgcaaaatgatgcatgatatatgtatgcaaaaat-gtatgtttttttttttgaaggactaatcaaagttactttgtaaaca 15682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 21610234 - 21610174
Alignment:
Q  167 ttttcaaaaggtaagaacgaaaccaagga--aaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||| ||||||||||||||||||  ||||||| |||||||||| ||||| ||||||    
T  21610234 ttttcaaaag-taagaacgaaaccaaggaaaaaaagttcttaacaaaagctaaagcttagtt 21610174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 15682752 - 15682789
Alignment:
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaa 158  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  15682752 aacatggtttcatttgaaaattgtgaagatattgcaaa 15682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 25494446 - 25494231
Alignment:
Q  12 acagactagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaac 110  Q
    ||||||||||||||||  ||||||| ||||||||||||||  |||| |||||||  ||||   || ||||||||| |||| |||||||| |||| |||||    
T  25494446 acagactagaaactatgaatgcaaagatgatgcatgatatatttatgcaaaaatgtacaaaacttttttttgaaggacttgtcaaagttgatttttaaac 25494347  T
Q  111 attgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaa 210  Q
    || |||||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  25494346 atggtagagaaacatggtttcatttgaaaattgtgaagatattgcaaaaggtccttttttcaaaaggtaagaacgaaaccaaggaaaaagttcttaacaa 25494247  T
Q  211 aagttaaagtttagtt 226  Q
    ||| ||||| ||||||    
T  25494246 aagctaaagcttagtt 25494231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 35141203 - 35141002
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagagg 120  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||| |||||||  |||||||| |||||||||||| ||||  |||||||||| ||||    
T  35141203 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttt--ttttgaaggacttatcaaagtgaattg-taaacattgtcgagg 35141107  T
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagt 220  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||||||||| ||||| |||||||||||||||||||||| || |||||||||| ||| |     
T  35141106 aacatagtttcatttgaaaattgtaaagatattgcaataggttctttttt-aaaagttaagaacgaaaccaaggaaaaacttcttaacaaaagctaaggc 35141008  T
Q  221 ttagtt 226  Q
    ||||||    
T  35141007 ttagtt 35141002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 15950526 - 15950713
Alignment:
Q  12 acagactagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaatagacaatttttattttt-gaagaacttatcaaagttaatttataaa 109  Q
    ||||||||||||||||  ||||||| ||||||||| ||||  |||| |||||||  ||||||||| ||||| |||| |||||||||||||||||| ||||    
T  15950526 acagactagaaactatgaatgcaaagatgatgcattatatatttatgcaaaaatgtacaattttttttttttgaaggacttatcaaagttaatttttaaa 15950625  T
Q  110 cattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa 197  Q
    ||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  15950626 catggtagagaaacatggtttcatttgaaaattgtgaagatattgcaaacggttcctttttcaaaaggtaagaacgaaatcaaggaaa 15950713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 30691445 - 30691600
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctttttt 170  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | ||| ||||||||| |||||||||||    
T  30691445 tttttttttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattatgaagatattgcaaaaggttctttttt 30691544  T
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||    
T  30691545 caaaaggtaagatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagtt 30691600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 42572072 - 42572227
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctttttt 170  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  42572072 tttttttttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattgtgaagatattgcaaaaggttctttttt 42572171  T
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||| | ||||||||||||||||||| |||||||||| ||||| ||||||    
T  42572172 caaaaggtaaaatcgaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 42572227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 24288173 - 24287996
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattg 114  Q
    |||||||||||||  ||||||||||||||||||| ||||||| |||||||||| ||     ||||| |||| |||||||||||| ||||  ||||||||     
T  24288173 gactagaaactatgaatgcaaaatgatgcatgatgtgcttatgcaaaaatagataaaaaaaatttt-gaaggacttatcaaagtgaattg-taaacatta 24288076  T
Q  115 tagaggaacatggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaag 193  Q
    ||||||||||||||||||||| ||| |||||||||   ||||||||||||| ||||||||||||||||||||||||||||    
T  24288075 tagaggaacatggtttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaag 24287996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 16276038 - 16275824
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-------gaagaacttatcaaagttaattt 104  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||   ||||| |||||       |||| |||| | ||||| || |     
T  16276038 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagatttttttttttttttttttttgaaggacttgttaaagtgaaatg 16275939  T
Q  105 ataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt- 202  Q
     ||||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| |||||     
T  16275938 -taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaagttc 16275840  T
Q  203 tttaacaaaagttaaa 218  Q
    ||||||| ||| ||||    
T  16275839 tttaacataagctaaa 16275824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 3763937 - 3764155
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-----------gaagaacttatcaaagtta 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    ||||| |||||           |||| |||| | ||||| |    
T  3763937 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagttttttttttttttttttttttttttgaaggacttgttaaagtga 3764036  T
Q  101 atttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaa 199  Q
    | |  ||||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| ||    
T  3764037 aatg-taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaa 3764135  T
Q  200 gtt-tttaacaaaagttaaa 218  Q
    ||| ||||||| ||| ||||    
T  3764136 gttctttaacataagctaaa 3764155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 21112506 - 21112415
Alignment:
Q  117 gaggaacatggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaa 207  Q
    |||||||||||||| |||| ||||||||||||| | | ||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||    
T  21112506 gaggaacatggttttattttgaaaattgtaaagatgtcgcaaacgattcctttttcaacaggtaagaacgaaaccaaggaaaaagttcttaa 21112415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 20278583 - 20278763
Alignment:
Q  40 atgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaa 139  Q
    ||||||| ||||||||||||||||||||||  ||||  |||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||||||||    
T  20278583 atgcatgctatgcttatacaaaaatagacacatttt--ttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttatttgaaa 20278677  T
Q  140 attgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||| ||| | ||||||  |||||  |||||||||| |||||||||||| |||||||||  | |||||||||| ||||| ||||||    
T  20278678 attgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaactaaggaaaaaaatcttaacaaaagctaaagcttagtt 20278763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 21857594 - 21857781
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttat----acaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaac 110  Q
    |||||||||||||  || ||||||||||||||||||||||||    | ||||| ||| |||  || ||||||||| |||||||||||  || |  |||||    
T  21857594 gactagaaactatgaatacaaaatgatgcatgatatgcttatgaaaaaaaaaaaagataataatt-tttttgaaggacttatcaaagcgaaatg-taaac 21857691  T
Q  111 attgtagaggaacatggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagt 201  Q
    |  |||   ||| |||||||||||| ||| |||||||||   | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21857692 acagtac--gaatatggtttcattttgaatattgtaaagacgtcgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaaaagt 21857781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 24692714 - 24692648
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattt 79  Q
    |||||| |||| |||  ||||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  24692714 cagacttgaaattatgaatgcaaaatgatgcacgatatgcttatgcaaaaatagacattttttattt 24692648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 24701554 - 24701488
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattt 79  Q
    |||||| |||| |||  ||||||||||||||| |||||| |||| |||||||||| | |||||||||    
T  24701554 cagacttgaaattatgaatgcaaaatgatgcacgatatgtttatgcaaaaatagatattttttattt 24701488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 19990304 - 19990239
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttt 80  Q
    |||||| ||||||||  |||||||||||||||||  | |||||| ||||||| || ||||||||||||    
T  19990304 cagacttgaaactatgaatgcaaaatgatgcatg--acgcttatgcaaaaatggaaaatttttatttt 19990239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 21113853 - 21113768
Alignment:
Q  11 cacagactagaaactatagatgcaaaa-tgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaag 97  Q
    ||||||||| |||||||  |||||||| |||||||||||||  |||| |||||||  ||||||||  ||||| ||| |||||||||||    
T  21113853 cacagactataaactatgaatgcaaaaatgatgcatgatatatttatgcaaaaatgtacaatttt--tttttaaaggacttatcaaag 21113768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 24962783 - 24962984
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagagg 120  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||| |||||||  |||||||| |||||||||||| ||||  |||||||||| ||||    
T  24962783 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttt--ttttgaaggacttatcaaagtgaattg-taaacattgtcgagg 24962879  T
Q  121 aacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagt 220  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||| ||||||||||| |||||||||||||||||||||| || |||||||||| ||| |     
T  24962880 aacatagtttcatttgaaaattgtaaagatattgcaataggttc-tttttcaaaagttaagaacgaaaccaaggaaaaacttcttaacaaaagctaaggc 24962978  T
Q  221 ttagtt 226  Q
    ||||||    
T  24962979 ttagtt 24962984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 23638629 - 23638472
Alignment:
Q  67 acaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctt 166  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||||||||  |||||||||||||||||||||||| ||| ||||||||| || || |    
T  23638629 acaattttt-tttttgaaggacttatcaaagttaatttttaaacattgtagataaacatggtttcatttgaaaattgtgaagatattgcaaaagg-tcct 23638532  T
Q  167 ttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  23638531 ttttcaaatgataagaacgaaaccaaggaaaaagttcttaacaaaagttaaagcttagtt 23638472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 23834263 - 23834417
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctttttt 170  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||||  |||||||||||||||||||||||| ||| ||||||||| || || |||||    
T  23834263 tttttttttttgaaggacttatcaaagttaatttttaaacattgtagataaacatggtttcatttgaaaattgtgaagatattgcaaaagg-tccttttt 23834361  T
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  23834362 caaatgataagaacgaaaccaaggaaaaagttcttaacaaaagttaaagcttagtt 23834417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 20379036 - 20378882
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctttttt 170  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | ||| ||||||||| ||||| |||||    
T  20379036 tttttttttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattatgaagatattgcaaaaggttc-ttttt 20378938  T
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    | |||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||    
T  20378937 cgaaaggtaagatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagtt 20378882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 28846472 - 28846342
Alignment:
Q  70 atttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttt 169  Q
    |||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||||||||| || || ||||    
T  28846472 atttttttttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattgtgaagatattgcaaaagg-tcctttt 28846374  T
Q  170 tcaaaaggtaagaacgaaaccaaggaaaaagt 201  Q
    ||||||||||||||||||||||||||||||||    
T  28846373 tcaaaaggtaagaacgaaaccaaggaaaaagt 28846342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 26871620 - 26871429
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    |||||| ||||||||||||  |||||| ||||||||||||  |||| |||| || | |||| ||||||| ||||| ||||||||||||| ||||||||      
T  26871620 atgcaagatgatgcatgat--gcttatgcaaaaatagacacatttt-ttttcgagggacttgtcaaagt-aatttgtaaacattgtagaagaacatggac 26871525  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    | | |||||| || |||||||||||||||||| ||  | |||||| ||||||||||||||||||||||||||| |||| ||||||| ||| ||||||    
T  26871524 ttagttgaaatttataaaggtattgcaaacggctccctcttcaaa-ggtaagaacgaaaccaaggaaaaagttcttaataaaagttgaagcttagtt 26871429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 29895693 - 29895486
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| ||||||||||||  ||||  |||||||| | || ||||||| |  || ||||| |    
T  29895693 cagacttgaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt--ttttgaaggatttgtcaaagtaa--ttgtaaactt 29895598  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| || |||||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||    
T  29895597 gata-aggaacattgttttatctgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaa 29895500  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  29895499 gctaaagcttagtt 29895486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 33842830 - 33843048
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-----------gaagaacttatcaaagtta 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    ||||| |||||           |||| |||| | ||||| |    
T  33842830 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagtattttttttttttttatttttttttgaaggacttgttaaagtga 33842929  T
Q  101 atttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaa 199  Q
    | |  ||||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| ||    
T  33842930 aatg-taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaa 33843028  T
Q  200 gtt-tttaacaaaagttaaa 218  Q
    ||| ||||||| ||| ||||    
T  33843029 gttctttaacataagctaaa 33843048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 12178670 - 12178784
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-t 203  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| ||||| |    
T  12178670 taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaagttct 12178769  T
Q  204 ttaacaaaagttaaa 218  Q
    |||||| ||| ||||    
T  12178770 ttaacataagctaaa 12178784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 21691066 - 21690966
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||||||| |||| ||| |||||| |  ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||    
T  21691066 aggaacattgttttatttgaaatttgtgaagatattgctattggttcctttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaa 21690968  T
Q  218 ag 219  Q
    ||    
T  21690967 ag 21690966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 36450822 - 36450638
Alignment:
Q  40 atgcatgatatgcttatacaaaaatagaca-attt-ttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttga 137  Q
    ||||||| ||||||||| |||||||||||| |||| || ||||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||||||    
T  36450822 atgcatgctatgcttatgcaaaaatagacacatttgttttttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttatttga 36450726  T
Q  138 aaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||| ||| | ||||||  |||||   ||||||||| |||||||||||||||||||||| || |||||||||| ||||| ||||||    
T  36450725 aaattgtgaagatgttgcaattggttcccatttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagtt 36450638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 11811523 - 11811637
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggta-ttgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-t 203  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| || || |||  ||||  |||||| |||||||||||||||||||||||| ||||| |    
T  11811523 taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaagaacgaaaccaaggaagaagttct 11811622  T
Q  204 ttaacaaaagttaaa 218  Q
    |||||| ||| ||||    
T  11811623 ttaacataagctaaa 11811637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 21993951 - 21994029
Alignment:
Q  124 atggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagt 201  Q
    |||||||||||| ||| |||||||||   | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21993951 atggtttcattttgaatattgtaaagacgtcgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaaaagt 21994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 26087439 - 26087553
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggta-ttgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-t 203  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| || || |||  ||||  |||||| |||||||||||||||||||||||| ||||| |    
T  26087439 taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaagaacgaaaccaaggaagaagttct 26087538  T
Q  204 ttaacaaaagttaaa 218  Q
    |||||| ||| ||||    
T  26087539 ttaacataagctaaa 26087553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 22956645 - 22956831
Alignment:
Q  33 caaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttca 132  Q
    |||||||||||||| ||||||||| ||||||||||||  |||| ||   |||| |||| ||||||| |  || ||||| |  || |||||||| |||| |    
T  22956645 caaaatgatgcatgttatgcttatgcaaaaatagacacattttctt---gaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgtttta 22956738  T
Q  133 tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||||| ||  | ||||||  |||||  ||| |||  ||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  22956739 tttgaaaattgtgaaaatgttgcaattggttccctttccaag-ggtaagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 22956831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 11811406 - 11811461
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaataga 67  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  11811406 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga 11811461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 20097245 - 20097343
Alignment:
Q  127 gtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||| ||||||||||||| ||| | ||||||  ||||   |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  20097245 gttttatttgaaaattgtgaagatgttgcaattggtttccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 20097343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 26087329 - 26087384
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaataga 67  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  26087329 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga 26087384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 27231634 - 27231689
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaataga 67  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  27231634 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga 27231689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 21865929 - 21866072
Alignment:
Q  16 actagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaa---tttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    ||||||||||||  | ||||||||||||||||||||||||  |||||||| ||||   ||||| || | |||| | |  ||||||| || || |||||||    
T  21865929 actagaaactatgaacgcaaaatgatgcatgatatgcttacgcaaaaatatacaaatttttttgttatcgaaggattcgtcaaagtgaa-ttgtaaacat 21866027  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaa 157  Q
      || | ||||||||||||||||||||||||| ||| ||||||||    
T  21866028 cttaaaagaacatggtttcatttgaaaattgtgaagatattgcaa 21866072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 7259635 - 7259680
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaattttt 75  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  7259635 atgcaaaatgatgcatgatatgcttatgcaaaaatagacacttttt 7259680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 7789317 - 7789218
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||| ||||||||||||   ||||||  |||||   |||||||| |||||||||||||||||||||||||| |||||||||| |||    
T  7789317 aggaacattgttttatttaaaaattgtaaagacgttgcaattggttc-cctttcaaaa-gtaagaacgaaaccaaggaaaaagttcttaacaaaagctaa 7789220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 12393203 - 12393302
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||| ||||||||||||   ||||||  |||||   |||||||| |||||||||||||||||||||||||| |||||||||| |||    
T  12393203 aggaacattgttttatttaaaaattgtaaagacgttgcaattggttc-cctttcaaaa-gtaagaacgaaaccaaggaaaaagttcttaacaaaagctaa 12393300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 25528787 - 25528582
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  |||||| |||||||||| ||||||||| ||||||||| ||  ||||   ||||||| |||| ||||||| |  || ||||| |    
T  25528787 cagacttgaaattatgaatgcaatatgatgcatgctatgcttatgcaaaaatagccacatttt---tttgaaggacttgtcaaagtaa--ttgtaaactt 25528693  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || || ||||| |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||| |||||||||| ||||||| ||| |||||    
T  25528692 gataaag-aacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaatgaaaccaagg-aaaagttcttagcaaaa 25528596  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  25528595 gctaaagcttagtt 25528582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 34464068 - 34464017
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt 81  Q
    |||||| |||||||||||||||||||| ||||||||||||  ||||||||||    
T  34464068 atgcaagatgatgcatgatatgcttatgcaaaaatagacacattttattttt 34464017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 20097162 - 20097232
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatac-aaaaatagaca-atttttatttttgaagaacttatcaaagt 98  Q
    ||||||||||||||||| ||||||||| | ||||||||||| |||||| ||||||||| |||| |||||||    
T  20097162 atgcaaaatgatgcatgctatgcttatgcaaaaaatagacacatttttttttttgaaggacttgtcaaagt 20097232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 1800622 - 1800523
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||| ||||||||||||   ||||||  |||||   |||||||| ||||||||||||| |||||||||||| |||||||||| |||    
T  1800622 aggaacattgttttatttaaaaattgtaaagacgttgcaattggttc-cctttcaaaa-gtaagaacgaaactaaggaaaaagttcttaacaaaagctaa 1800525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 12178564 - 12178617
Alignment:
Q  15 gactagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaataga 67  Q
    |||||||||||||  ||||||| |||||||||||||||||||| ||||||||||    
T  12178564 gactagaaactatgaatgcaaagatgatgcatgatatgcttatgcaaaaataga 12178617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 27231742 - 27231789
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggtatt 153  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| ||||    
T  27231742 taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatt 27231789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 21993849 - 21993890
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttat 56  Q
    |||||||||||||  || ||||||||||||||||||||||||    
T  21993849 gactagaaactatgaatacaaaatgatgcatgatatgcttat 21993890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 28270433 - 28270242
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcat 133  Q
    |||||||||||||||||   ||| |||||||  |  |||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||    
T  28270433 aaaatgatgcatgatatatgtatgcaaaaatgtattattttt-tttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcat 28270335  T
Q  134 ttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||    
T  28270334 ttgaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaagatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagtt 28270242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 28305402 - 28305211
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcat 133  Q
    |||||||||||||||||   ||| |||||||  |  |||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||    
T  28305402 aaaatgatgcatgatatatgtatgcaaaaatgtattattttt-tttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcat 28305304  T
Q  134 ttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||    
T  28305303 ttgaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaagatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagtt 28305211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 28349183 - 28348992
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcat 133  Q
    |||||||||||||||||   ||| |||||||  |  |||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||    
T  28349183 aaaatgatgcatgatatatgtatgcaaaaatgtattattttt-tttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcat 28349085  T
Q  134 ttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||    
T  28349084 ttgaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaagatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagtt 28348992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 25503991 - 25504196
Alignment:
Q  21 aaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaattt--ttatttttgaagaacttatcaaagttaatttataaacattgtaga 118  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||| ||     | |  ||||||| |||||||||||| ||||  |||||||||||||    
T  25503991 aaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataaaaaaataaaatttgaaggacttatcaaagtgaattg-taaacattgtaga 25504089  T
Q  119 ggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    ||||||| |||||||||||||||||||||| ||||||||  ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  25504090 ggaacatagtttcatttgaaaattgtaaagatattgcaataggttc-tttttcaaaagttaagaactaaaccaaggaaaaagttcttaacaaaagctaaa 25504188  T
Q  219 gtttagtt 226  Q
    | ||||||    
T  25504189 gcttagtt 25504196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 16636747 - 16636545
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaaca 111  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||     ||| ||||||||| |||| | ||||| ||  | ||||||    
T  16636747 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga-----tttttttttgaaggacttgttaaagtgaa-atgtaaaca 16636654  T
Q  112 ttgtagaggaacatggtttcatttgaaaattgtaaaggta-ttgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-tttaaca 209  Q
    | | |||||||||||||||||| |||||||||| ||| || || |||  ||||  ||||||||||||||||||||||| ||||||| ||||| |||||||    
T  16636653 tggcagaggaacatggtttcatatgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaatcaaggaagaagttctttaaca 16636554  T
Q  210 aaagttaaa 218  Q
     ||| ||||    
T  16636553 gaagctaaa 16636545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 27071744 - 27071956
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagaca-atttttatt--tttgaagaacttatcaaagttaatttataaa 109  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| |||||||||||| |||||| ||  ||||||| |||| ||||||| |  || ||||    
T  27071744 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatagacacattttttttgttttgaaggacttgtcaaagtaa--ttgtaaa 27071841  T
Q  110 cattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaaca 209  Q
    | |  || |||||||| |||| ||||||||||||| ||| | ||||||  |||||  |||||||||| ||||||||||||||||||||||  | ||||||    
T  27071842 cttgata-aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaaatcttaaca 27071939  T
Q  210 aaagttaaagtttagtt 226  Q
    |||| ||||| ||||||    
T  27071940 aaagctaaagcttagtt 27071956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 16582172 - 16582077
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctt 166  Q
    ||||| || |||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | ||| ||||||||| |||||||    
T  16582172 ttttttttgttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattatgaagatattgcaaaaggttctt 16582077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 16613208 - 16613303
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctt 166  Q
    ||||| || |||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | ||| ||||||||| |||||||    
T  16613208 ttttttttgttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattatgaagatattgcaaaaggttctt 16613303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 20456935 - 20457128
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaa-tagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggt 128  Q
    |||| |||||||||||||||||||||| |||||| ||||||  |||| ||||||||| |||| ||||||| |  || ||||| |  || |||||||| ||    
T  20456935 atgctaaatgatgcatgatatgcttatgcaaaaaatagacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgt 20457030  T
Q  129 ttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    || ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||| ||||||    
T  20457031 tttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagtt 20457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 22326463 - 22326277
Alignment:
Q  33 caaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttca 132  Q
    ||||||||||||||||  |||||| |||||||||||| |||||| ||| |||| |||| ||||||| |  || || || |  || |||||||| |||| |    
T  22326463 caaaatgatgcatgat--gcttatgcaaaaatagacattttttaattt-gaaggacttgtcaaagtaa--ttgtagacttgata-aggaacattgtttta 22326370  T
Q  133 tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||| |||| ||| | ||||||  |||||  |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  22326369 tttgaaatttgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 22326277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 22776680 - 22776887
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||  ||||||||| ||||||||||||  ||||  |||||||| |||| ||||||| |  || ||||| |    
T  22776680 cagacttgaaattatgtatgcaaaatgatgcatcctatgcttatgcaaaaatagacacatttt--ttttgaaggacttgtcaaagtaa--ttgtaaactt 22776775  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| || |  ||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||    
T  22776776 gata-aggaacattgttttatctagaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaa 22776873  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  22776874 gctaaagcttagtt 22776887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 27056395 - 27056509
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggta-ttgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-t 203  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| || || |||  ||||  |||||| |||||||||||||||||||||||| ||||| |    
T  27056395 taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaagaacgaaaccaaggaagaagttct 27056494  T
Q  204 ttaacaaaagttaaa 218  Q
    |||||| ||| ||||    
T  27056495 ttaacataagctaaa 27056509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 27056273 - 27056328
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaataga 67  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  27056273 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga 27056328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 620912 - 621019
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| ||||||||||||| ||| | || |||  |||||  |||||||||| |||||||||||||||  |||||||| |||||||||| |||    
T  620912 aggaacattgttttatttgaaaattgtgaagatgttccaattggttcccttttcaaaag-taagaacgaaaccaaaaaaaaagttcttaacaaaagctaa 621010  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  621011 agcttagtt 621019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 19716240 - 19716050
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||| ||||||||  ||||||||| ||||||||||||  ||||   ||||||| |||| ||||||| |  || ||||| |  || |||||||| |||    
T  19716240 atgcaaagtgatgcattctatgcttatgcaaaaatagacacatttt---tttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgtt 19716147  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    | ||||||||||||| ||| | ||| ||  |||||  |||||||||| |||||||||||||||||| ||||||| |||||||||  ||||| ||||||    
T  19716146 ttatttgaaaattgtgaagatgttgtaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaagttcttaacaaaacctaaagcttagtt 19716050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 27512456 - 27512351
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||| |||||||||||||| ||||||  |||||   |||||||| |||||||||||||||||| ||| ||| |||||||||| |||    
T  27512456 aggaacattgttttatttaaaaattgtaaaggtgttgcaattggttc-cctttcaaaa-gtaagaacgaaaccaagg-aaaggttcttaacaaaagctaa 27512360  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  27512359 agcttagtt 27512351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 16822828 - 16822878
Alignment:
Q  168 tttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaag 219  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  16822828 tttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaag 16822878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 20045692 - 20045742
Alignment:
Q  168 tttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaag 219  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  20045692 tttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaag 20045742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 18946910 - 18946993
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagt 98  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| ||||||||||||  |||  ||||||||| |||| |||||||    
T  18946910 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatagacacattt--tttttgaaggacttgtcaaagt 18946993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 2307 - 2105
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaaca 111  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| |||   ||| |||| ||||||| || |  ||||||    
T  2307 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacaattttttttt---aaggacttgtcaaagtgaaatg-taaaca 2212  T
Q  112 ttgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaa 211  Q
      ||||||||||||||||||||||||||||| ||||| ||||||||  ||||| ||||||||||||||||||| ||||||| |||| |||| |||||||     
T  2211 cagtagaggaacatggtttcatttgaaaattttaaagatattgcaataggttcctttttcaaaaggtaagaacaaaaccaacgaaagagttcttaacaac 2112  T
Q  212 agttaaa 218  Q
    |||||||    
T  2111 agttaaa 2105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 29024739 - 29024536
Alignment:
Q  15 gactagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacatt 113  Q
    |||||||||||||  ||||||| ||||||||||||||  |||| || ||||  || |||||| ||||| ||| |||||||||||||||||| ||||||||    
T  29024739 gactagaaactatgaatgcaaagatgatgcatgatatatttatgcagaaatgtactatttttttttttaaaggacttatcaaagttaatttttaaacatt 29024640  T
Q  114 gtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaag 213  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||| || || ||||||||| | ||||||||||||||||||||||||| ||||||||||    
T  29024639 gtagagaaacatggtttcatttgaaaattgtgaagatattgcaaaagg-tcctttttcaaatgataagaacgaaaccaaggaaaaagttcttaacaaaag 29024541  T
Q  214 ttaaa 218  Q
     ||||    
T  29024540 ctaaa 29024536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 4949683 - 4949897
Alignment:
Q  11 cacagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaataga-caatttttatttttgaagaacttatcaaagttaatttataaa 109  Q
    |||| ||||||||||||  ||||||||||| ||||||||||||||| ||||||||||    ||||| ||||||||| ||||||| |||| || || ||||    
T  4949683 cacatactagaaactatgaatgcaaaatgaggcatgatatgcttatgcaaaaatagatttttttttttttttgaaggacttatc-aagtgaa-ttgtaaa 4949780  T
Q  110 cattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaaca 209  Q
    ||| | ||| ||||||| ||||||||||||||||||||| ||||||||  | ||| |||||||||||||||||||||||||||||||| |||| | ||||    
T  4949781 catggcagacgaacatgatttcatttgaaaattgtaaagatattgcaatagattcctttttcaaaaggtaagaacgaaaccaaggaaagagttctaaaca 4949880  T
Q  210 aaagttaaagtttagtt 226  Q
    |||||||||| ||||||    
T  4949881 aaagttaaagcttagtt 4949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 12586954 - 12586765
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    |||||||||||||||||||  |||||| ||||||||||||  ||||    |||||| | || |||||||  ||||  ||||||| |||||||||||||||    
T  12586954 atgcaaaatgatgcatgat--gcttatgcaaaaatagacacatttt----ttgaaggatttgtcaaagt--atttggaaacattatagaggaacatggtt 12586863  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttc-ttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||| |||||||||||| ||||||||  ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||    
T  12586862 tcatttaaaaattgtaaagatattgcaataggttccttttttcaaaaggtaagaacgaaaccaaagaaaaagttcttaacaaaagctaaagcttagtt 12586765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 13834088 - 13833898
Alignment:
Q  11 cacagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaa----tttttatttttgaagaacttatcaaagttaatttat 106  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||        ||||| ||||||||| |||||||||||| ||||  |    
T  13834088 cacatactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagttttgttttttttttttttgaaggacttatcaaagtgaattg-t 13833990  T
Q  107 aaacattgtagaggaacatggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa 197  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||   ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  13833989 aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaatcaaggaaa 13833898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 27436500 - 27436388
Alignment:
Q  114 gtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaag 213  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||  ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  27436500 gtagaggaacatggtttcatttgaaaattttaaagatattgcaataggttcctttttcaaaaggtaagaacgaaaccaaggaaagagttcttaacaaaag 27436401  T
Q  214 ttaaagtttagtt 226  Q
    |||||| ||||||    
T  27436400 ttaaagcttagtt 27436388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 840745 - 840565
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    |||||| ||||||||||||  |||||| ||||||||||||  |||| |||| || | |||| ||||||| ||||| ||||||||||||| ||||||||      
T  840745 atgcaagatgatgcatgat--gcttatgcaaaaatagacacatttt-ttttcgagggacttgtcaaagt-aatttgtaaacattgtagaagaacatggac 840650  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagtt 215  Q
    | ||||||||||| |||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||| ||||||||||||    
T  840649 ttatttgaaaattataaaggtattgcaaacggttccctcttc-aaaggtaagaacgaaaccaaggaaaaagttcttaacaaaagtt 840565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 847921 - 847741
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    |||||| ||||||||||||  |||||| ||||||||||||  |||| |||| || | |||| ||||||| ||||| ||||||||||||| ||||||||      
T  847921 atgcaagatgatgcatgat--gcttatgcaaaaatagacacatttt-ttttcgagggacttgtcaaagt-aatttgtaaacattgtagaagaacatggac 847826  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagtt 215  Q
    | ||||||||||| |||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||| ||||||||||||    
T  847825 ttatttgaaaattataaaggtattgcaaacggttccctcttc-aaaggtaagaacgaaaccaaggaaaaagttcttaacaaaagtt 847741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 1205925 - 1205745
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    |||||| ||||||||||||  |||||| ||||||||||||  |||| |||| || | |||| ||||||| ||||| ||||||||||||| ||||||||      
T  1205925 atgcaagatgatgcatgat--gcttatgcaaaaatagacacatttt-ttttcgagggacttgtcaaagt-aatttgtaaacattgtagaagaacatggac 1205830  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagtt 215  Q
    | ||||||||||| |||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||| ||||||||||||    
T  1205829 ttatttgaaaattataaaggtattgcaaacggttccctcttc-aaaggtaagaacgaaaccaaggaaaaagttcttaacaaaagtt 1205745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 4829883 - 4830057
Alignment:
Q  49 atgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaag 148  Q
    |||||||| |||||||||||| ||||| ||||| ||| | || ||||||| |  ||  ||||||| ||||||||| || |||||||||||||||||||||    
T  4829883 atgcttatgcaaaaatagacacttttttttttt-aaggatttgtcaaagtaa--ttggaaacattatagaggaacgtgatttcatttgaaaattgtaaag 4829979  T
Q  149 gtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
     ||||||||  ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||| | ||||||    
T  4829980 atattgcaataggttcctttttcaaaaggtaagaacgaaaccaaggaaaaagttcttaataaaagctaaggcttagtt 4830057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 567174 - 567369
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-----gaagaacttatcaaagttaatttat 106  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||   ||||| |||||     |||| |||| | ||||| || |  |    
T  567174 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagatttttttttttttttttttgaaggacttgttaaagtgaaatg-t 567272  T
Q  107 aaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt 202  Q
    |||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| |||||    
T  567273 aaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaagtt 567369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 27974215 - 27974429
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-------gaagaacttatcaaagttaattt 104  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||   ||||| |||||       |||| |||| | ||||| || |     
T  27974215 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagatttttttttttttttttttttgaaggacttgttaaagtgaaatg 27974314  T
Q  105 ataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt- 202  Q
     ||||||| | |||||||||| |||||||||||||||||| ||| ||||  |||  ||||  |||||||||||||||||||||||||||||||||||||     
T  27974315 -taaacatggcagaggaacattgtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaaaaagttc 27974413  T
Q  203 tttaacaaaagttaaa 218  Q
    ||||||| ||| ||||    
T  27974414 tttaacataagctaaa 27974429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 5207096 - 5207314
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttattttt-----------gaagaacttatcaaagtta 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||   ||||| |||||           |||| |||| | ||||| |    
T  5207096 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagatttttttttttttttttttttttttgaaggacttgttaaagtga 5207195  T
Q  101 atttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattg-caaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaa 199  Q
    | |  ||||||| | ||||||||||||||||||||||||||||| ||| ||||  |||  ||||  ||||||||||||||||||||||||||||||| ||    
T  5207196 aatg-taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaagaa 5207294  T
Q  200 gtt-tttaacaaaagttaaa 218  Q
    ||| ||||||| ||| ||||    
T  5207295 gttctttaacataagctaaa 5207314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 34136591 - 34136798
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| |||||||| |||  ||||   ||||||| |||| ||||||| |  || ||||| |    
T  34136591 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatatacacatttt---tttgaaggacttgtcaaagtaa--ttgtaaactt 34136685  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaa 211  Q
      || |||||||| |||| ||||||||||||| ||| | ||||||  |||||  |||| |||| || |||||||||||||||| ||||||| ||||||||    
T  34136686 gata-aggaacattgttttatttgaaaattgtgaagatgttgcaattggttccctttttaaaa-gtgagaacgaaaccaaggataaaagttcttaacaaa 34136783  T
Q  212 agttaaagtttagtt 226  Q
    || ||||| ||||||    
T  34136784 agataaagcttagtt 34136798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 1959563 - 1959672
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagttttt 205  Q
    ||||||||||||||||||||   || ||||||||||||||||| |||||||| | ||||        ||| |||||||||||||||||||| ||||| ||    
T  1959563 taaacattgtagaggaacataactttatttgaaaattgtaaagatattgcaatcagttc--------aaaagtaagaacgaaaccaaggaagaagttctt 1959654  T
Q  206 aacaaaagttaaagttta 223  Q
    |||||||| |||||||||    
T  1959655 aacaaaagctaaagttta 1959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 13268329 - 13268436
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| ||||||||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||| ||||| || |||||||||| |||    
T  13268329 aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaagaaaaaaattcttaacaaaagctaa 13268427  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  13268428 agcttagtt 13268436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 8812952 - 8812845
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| ||||||||||||| ||| | || |||  |||||  |||||||||| |||||||||||||||  |||||||| |||||||||| |||    
T  8812952 aggaacattgttttatttgaaaattgtgaagatgttccaattggttcccttttcaaaag-taagaacgaaaccaaaaaaaaagttcttaacaaaagctaa 8812854  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  8812853 agcttagtt 8812845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 803204 - 803286
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacatt 113  Q
    |||||| |||||||||||||||||||| ||||||||||||  |||| |||| |||| |||||| |||| || ||| ||||||||    
T  803204 atgcaagatgatgcatgatatgcttatgcaaaaatagacacatttt-ttttcgaaggacttataaaagctattttgtaaacatt 803286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 16292071 - 16292119
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatt 78  Q
    |||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  16292071 atgcaagatgatgcatgatatgcttatgcaaaaatagacacattttatt 16292119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 16270392 - 16270458
Alignment:
Q  160 ggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||| |||||||||||| ||||  |||||  |||||| |||||||||| ||||| ||||||    
T  16270392 ggttctttttccaaaaggtaagagcgaactcaaggggaaagttcttaacaaaagctaaagcttagtt 16270458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 23884583 - 23884643
Alignment:
Q  167 ttttcaaaaggtaagaacgaaaccaagg--aaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||| |||||||||||||||||  |||||||| |||||||||| ||||| ||||||    
T  23884583 ttttcaaaag-taagaacgaaaccaaggaaaaaaagttcttaacaaaagctaaagcttagtt 23884643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 74106 - 74320
Alignment:
Q  15 gactagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaatagacaatttttattttt---gaagaacttatcaaagttaatttataaac 110  Q
    |||||||||||||  ||||||| |||||||||||||||||||| ||||||| ||||| |||| |||||   |||| |||||||||||| ||||  |||||    
T  74106 gactagaaactatgaatgcaaagatgatgcatgatatgcttatgcaaaaatggacaaatttttttttttatgaaggacttatcaaagtgaattg-taaac 74204  T
Q  111 attgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaa 210  Q
    || | | ||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||| |  |||| ||| |||||||    
T  74205 atggcaaaggaacatggtttcatttgaaaattgtaaagatattgcaataggttcctttttcaaaaggtaagaacgaaaccgaaaaaaaggttcttaacaa 74304  T
Q  211 aagttaaagtttagtt 226  Q
    ||| ||||| ||||||    
T  74305 aagctaaagcttagtt 74320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 17680424 - 17680603
Alignment:
Q  16 actagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattg 114  Q
    ||||||||||||  ||||||| ||||||||||||||  |||| |||||||  ||||||||| ||||  ||| |||||||||||||||||| ||||||| |    
T  17680424 actagaaactatgaatgcaaagatgatgcatgatatatttatgcaaaaatgtacaatttttttttt--aaggacttatcaaagttaatttttaaacatgg 17680521  T
Q  115 tagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa 197  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||| || || ||||||||||||||||||||||||||||||||    
T  17680522 tagagaaacatggtttcatttgaaaattgtgaagatattgcaaaagg-tcctttttcaaaaggtaagaacgaaaccaaggaaa 17680603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 39843077 - 39843258
Alignment:
Q  12 acagactagaaactatagatgcaaa-atgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaac 110  Q
    ||||||||||||||||  ||||||| ||||||||||||||  |||| |||||||  |||||||||    |||||| |||||||||||||||||| |||||    
T  39843077 acagactagaaactatgaatgcaaagatgatgcatgatatatttatgcaaaaatgtacaattttt----ttgaaggacttatcaaagttaatttttaaac 39843172  T
Q  111 attgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa 197  Q
    || |||||| |||||||||||||||||||||||| ||| ||||||||| ||  | ||||||||||||||||||||||||||||||||    
T  39843173 atggtagagaaacatggtttcatttgaaaattgtgaagatattgcaaaagg-ccctttttcaaaaggtaagaacgaaaccaaggaaa 39843258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 6666332 - 6666120
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatac-aaaaatagacaa---tttttatttttgaagaacttatcaaagttaatttataaac 110  Q
    |||||||||||||  ||||||||||||||||||||||||||| | ||||||||| ||   ||||| ||||||||| | |||||||||| ||  | |||||    
T  6666332 gactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaaatagataattctttttttttttgaaggatttatcaaagtgaa-atgtaaac 6666234  T
Q  111 attgtagaggaacatggtttcatttgaaa-attgtaaaggtattgcaaacggtt-cttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaac 208  Q
    |||||||||||| |||||||||||| ||| ||||||| | | ||||||||| || |||||||||||    |||||||||||||||||||||||| |||||    
T  6666233 attgtagaggaaaatggtttcattttaaacattgtaaggatgttgcaaacgattccttttttcaaa----aagaacgaaaccaaggaaaaagttcttaac 6666138  T
Q  209 aaaagttaaagtttagtt 226  Q
    ||||| ||||| ||||||    
T  6666137 aaaagctaaagcttagtt 6666120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 24709083 - 24709200
Alignment:
Q  109 acattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaac 208  Q
    |||||| ||||||||||||||| | ||||||||||||||| |||||||| ||||||  |||||||||   ||||||||| |||||||| || || |||||    
T  24709083 acattgcagaggaacatggttttaattgaaaattgtaaagatattgcaatcggttcccttttcaaaaaacaagaacgaagccaaggaagaaattcttaac 24709182  T
Q  209 aaaagttaaagtttagtt 226  Q
    ||||| ||||| ||||||    
T  24709183 aaaagctaaagcttagtt 24709200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 20736306 - 20736115
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| |||| |||| ||||||||||||  ||||   ||||||| |||| ||||||| |  || ||||| |  || ||||||||  ||    
T  20736306 atgcaaaatgatgcatgctatgtttattcaaaaatagacacatttt---tttgaaggacttgtcaaagtca--ttgtaaacttgata-aggaacattatt 20736213  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    | ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||| ||||||    
T  20736212 ttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagtt 20736115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 20744864 - 20744673
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| |||| |||| ||||||||||||  ||||   ||||||| |||| ||||||| |  || ||||| |  || ||||||||  ||    
T  20744864 atgcaaaatgatgcatgctatgtttattcaaaaatagacacatttt---tttgaaggacttgtcaaagtca--ttgtaaacttgata-aggaacattatt 20744771  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    | ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||| ||||||    
T  20744770 ttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagtt 20744673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 32002343 - 32002160
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| ||||||||| ||||||||||||  |||| ||||  ||| |||| ||||||| |  || |||||||  || |||||||| |||    
T  32002343 atgcaaaatgatgcatgctatgcttatgcaaaaatagacacattttttttt--aaggacttgtcaaagtca--ttgtaaacataata-aggaacattgtt 32002249  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaag 219  Q
    | ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||    
T  32002248 ttatttgaaaattgtgaagatgttgcaattggttc-cttttcaaaa-gtaagaacgaaaccaaggataaaagttcttaacaaaagctaaag 32002160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 22160632 - 22160813
Alignment:
Q  40 atgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaa 139  Q
    ||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||||||||    
T  22160632 atgcatgctatgcttatgcaaaaatagacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttatttgaaa 22160727  T
Q  140 attgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| ||  ||||||||| ||||| ||||||    
T  22160728 attgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcataacaaaagctaaagcttagtt 22160813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 25856752 - 25856959
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| ||||||||||||  ||||  ||| |||| |||| ||||||| |  || ||||| |    
T  25856752 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt--tttcgaaggacttgtcaaagtaa--ttgtaaactt 25856847  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| || |||||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || ||| |||||    
T  25856848 gata-aggaacattgttttatctgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttagcaaaa 25856945  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  25856946 gctaaagcttagtt 25856959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 20741348 - 20741157
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| |||| |||| | ||||||||||  ||||   ||||||| |||| ||||||| |  || |||||||  || ||||||||  ||    
T  20741348 atgcaaaatgatgcatgctatgtttattcgaaaatagacacatttt---tttgaaggacttgtcaaagtca--ttgtaaacatgata-aggaacattatt 20741255  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    | ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| | |||||||| ||||| ||||||    
T  20741254 ttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttctaaacaaaagctaaagcttagtt 20741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 8100622 - 8100751
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctttttt 170  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||||||||| || || |||||    
T  8100622 tttttttttttgaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcatttgaaaattgtgaagatattgcaaaagg-tccttttt 8100720  T
Q  171 caaaaggtaagaacgaaaccaaggaaaaagt 201  Q
    |||||||||||||||||||||||||||||||    
T  8100721 caaaaggtaagaacgaaaccaaggaaaaagt 8100751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 21529142 - 21529327
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagac--------aatttttatttttgaagaacttatcaaagttaatttat 106  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||| ||||         | ||||| ||||||||| |||||||||||| ||||  |    
T  21529142 gactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaactagatttttttagattttttttttttgaaggacttatcaaagtgaattg-t 21529240  T
Q  107 aaacattgtagaggaacatggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaa 192  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||   ||||||||||||| ||||||||||||||||||| |||||||    
T  21529241 aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacaaaaccaa 21529327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 20556509 - 20556301
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| |||||||| |||  |||| ||||||||| |||| ||||||| |  || ||||| |    
T  20556509 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatatacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaactt 20556413  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| ||||||||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||    
T  20556412 gata-aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaa 20556315  T
Q  213 gttaaagtttagtt 226  Q
    | ||||| ||||||    
T  20556314 gctaaagcttagtt 20556301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 3359738 - 3359618
Alignment:
Q  107 aaacattgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttctttttt-caaaaggtaagaacgaaaccaaggaaaaagttttt 205  Q
    ||||||| |||| |||||| |||||||||||||||||||||| ||||||||  |||| |||||| |||||||||||| |||| |||||| ||||||| ||    
T  3359738 aaacattatagaagaacattgtttcatttgaaaattgtaaagatattgcaataggtttttttttccaaaaggtaagagcgaacccaagggaaaagttctt 3359639  T
Q  206 aacaaaagttaaagtttagtt 226  Q
    |||||||| ||||| ||||||    
T  3359638 aacaaaagctaaagcttagtt 3359618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 3386040 - 3386223
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| |||||||  | || ||||| |||   |||||||| |||    
T  3386040 atgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt-tttttgaaggacttgtcaaagt--aattgtaaac-ttgataaggaacattgtt 3386135  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    | ||||||||||||| ||| | ||||||  ||||   ||||||||| ||||||||||||||||||||||  || |||||||||| ||||    
T  3386136 taatttgaaaattgtgaagatgttgcaattggttaccttttcaaaa-gtaagaacgaaaccaaggaaaatattcttaacaaaagctaaa 3386223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 9187437 - 9187233
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| |||||||  | || ||||| |    
T  9187437 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttt-tttttgaaggacttgtcaaagt--aattgtaaac-t 9187342  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaa---agtttttaaca 209  Q
    ||   |||||||| |||| ||||||||||||| ||| | ||||||  ||||   ||||||||| ||||||||||||||||||||||   |||| ||||||    
T  9187341 tgataaggaacattgttttatttgaaaattgtgaagatgttgcaattggtttccttttcaaaa-gtaagaacgaaaccaaggaaaaaatagttcttaaca 9187243  T
Q  210 aaagttaaag 219  Q
    |||| |||||    
T  9187242 aaagctaaag 9187233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 14884117 - 14883931
Alignment:
Q  35 aaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatt 134  Q
    |||||||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |  || |||||| | |||| |||    
T  14884117 aaatgatgcatgctatgcttatgcaaaaatagacacattttttttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaactttgttttatt 14884021  T
Q  135 tgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||| ||| | ||||||  |||||  ||||||||| |||||||||||||| ||||||||| | |||||||||| ||||| ||||||    
T  14884020 tgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaacc-aggaaaaagctattaacaaaagctaaagcttagtt 14883931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 22706564 - 22706380
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaa-tagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggt 128  Q
    ||||||||||||| ||||||||||||| |||||| ||||||  |||| ||||||||| |||| ||||||| |  || | ||| |  || |||||||| ||    
T  22706564 atgcaaaatgatgtatgatatgcttatgcaaaaaatagacacgtttt-tttttgaaggacttgtcaaagtaa--ttgtgaacttgata-aggaacattgt 22706469  T
Q  129 ttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    || |||||||| |||| ||| |||||| |  ||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||    
T  22706468 tttatttgaaatttgtgaagatattgctattggttcctttttcaaaag-taagaacgaaaccaaggaaaaagttcttagcaaaagctaaa 22706380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 14919951 - 14919866
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagt 98  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| |||| |||||||    
T  14919951 cagacttgaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacattttttttatttgaaggacttgtcaaagt 14919866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 15077298 - 15077406
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa-aagtttttaacaaaagtta 216  Q
    |||||||| |||| |||||||| |||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||| ||||| |||||||||| ||    
T  15077298 aggaacattgttttatttgaaagttgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaagaagttcttaacaaaagcta 15077396  T
Q  217 aagtttagtt 226  Q
    ||| ||||||    
T  15077397 aagcttagtt 15077406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 15079604 - 15079712
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagg-aaaaagtttttaacaaaagtta 216  Q
    |||||||| |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| |||||||||||||||||| ||||| || |||||||||| ||    
T  15079604 aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggaaaaaaattcttaacaaaagcta 15079702  T
Q  217 aagtttagtt 226  Q
    ||| ||||||    
T  15079703 aagcttagtt 15079712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 18038770 - 18038665
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||| |||||||||||||| ||||||  |||||   |||||||| |||||||||||||||||| ||| ||| |||||||||| |||    
T  18038770 aggaacattgttttatttaaaaattgtaaaggtgttgcaattggttc-cctttcaaaa-gtaagaacgaaaccaagg-aaaggttcttaacaaaagctaa 18038674  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  18038673 agcttagtt 18038665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 26218314 - 26218361
Alignment:
Q  171 caaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  26218314 caaaaggtaagatcaaaaccaaggaaaaagttcttaacaaaagttaaa 26218361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 15900529 - 15900622
Alignment:
Q  132 atttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||||||| ||| | ||||||  || ||  |||||||||| ||||||||||||| ||||||||||| |||| ||||| ||||| ||||||    
T  15900529 atttgaaaattgtgaagatgttgcaattggctcccttttcaaaag-taagaacgaaaccgaggaaaaagttcttaataaaagctaaagcttagtt 15900622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 16725697 - 16725743
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatac-aaaaatagacaattttt 75  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||    
T  16725697 atgcaaaatgatgcatgatatgcttatgcaaaaaatagacacttttt 16725743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 26218187 - 26218225
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatat 50  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  26218187 acagactagaaactatgaatgcaaaatgatgcatgatat 26218225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 3841585 - 3841653
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatac-aaaaatagacaatttttatttttgaagaacttatcaaagt 98  Q
    ||||||||||||| ||||||||||||| | |||||||||||  |||| ||||||||| |||| |||||||    
T  3841585 atgcaaaatgatgtatgatatgcttatgcaaaaaatagacacgtttt-tttttgaaggacttgtcaaagt 3841653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 6748 - 6934
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattg 114  Q
    ||||||||| |||  |||||||||||||||||||||||||||  |||||||||||||||   ||||||||| |||||||||||| || || ||||| |||    
T  6748 gactagaaattatgaatgcaaaatgatgcatgatatgcttatgtaaaaatagacaattt---tttttgaaggacttatcaaagtgaa-ttgtaaacgttg 6843  T
Q  115 tagaggaacatggtttca-tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagttttt 205  Q
    |||||| ||||||||||| |||||| |||||||||   |||| ||||||||  ||||  ||||||||||||||||||||||||| |||||||    
T  6844 tagagggacatggtttcattttgaacattgtaaagacgttgc-aacggttccctttttgaaaggtaagaacgaaaccaaggaaagagttttt 6934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 144307 - 144487
Alignment:
Q  15 gactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattg 114  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||||  |||| |  ||||| ||| ||| |||||||| || || |||||||||    
T  144307 gactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag--aattatattttttcaaggactaatcaaagtgaa-ttgtaaacattg 144403  T
Q  115 tagaggaacatggtttca-tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa 197  Q
    ||| ||||||||| |||| |||| | |||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||    
T  144404 tagtggaacatggcttcattttggacattgtaaagacgttgcaaacggtttctttttcaaaaggtaagaacgaaaccaaggaaa 144487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 8922 - 8710
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagaca-atttttatttttgaagaacttatcaaagttaatttataaaca 111  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||| |||||||  | || |||||     
T  8922 cagacttgaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatagacacatttttttttttgaagaacttctcaaagt--aattgtaaac- 8826  T
Q  112 ttgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaa 210  Q
    |||   ||||| || |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  8825 ttgataaggaatattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttcttaacaa 8726  T
Q  211 aagttaaagtttagtt 226  Q
    ||| ||||| ||||||    
T  8725 aagctaaagcttagtt 8710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 4922 - 5132
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| |||| |||||||  | || || || |    
T  4922 cagactggaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacattttttttatttgaaggacttgtcaaagt--aattgtagac-t 5018  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagg-aaaaagtttttaacaaa 211  Q
    ||   |||||||| |||| |||||||| |||| ||| | ||||||  | |||  ||||||||| |||||||||||||||||| |||||||| ||||||||    
T  5019 tgataaggaacattgttttatttgaaatttgtgaagatgttgcaattgattcccttttcaaaa-gtaagaacgaaaccaaggaaaaaagttcttaacaaa 5117  T
Q  212 agttaaagtttagtt 226  Q
    || ||||||||||||    
T  5118 agctaaagtttagtt 5132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 11036 - 11121
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagt 98  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| |||| |||||||    
T  11036 cagactggaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacattttttttatttgaaggacttgtcaaagt 11121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 37069 - 37278
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||||||||||||| |||||||||||| ||||||  ||||||| |||| |||||||  | || || || |    
T  37069 cagactggaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacatttttta--tttgaaggacttgtcaaagt--aattgtagactt 37164  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagg-aaaaagtttttaacaaa 211  Q
      || |||||||| |||| |||||||| |||| ||| | ||||||   ||||  ||||||||| |||||||||||||||||| |||||||| ||||||||    
T  37165 gataaaggaacattgttttatttgaaatttgtgaagatgttgcaattagttcccttttcaaaa-gtaagaacgaaaccaaggaaaaaagttcttaacaaa 37263  T
Q  212 agttaaagtttagtt 226  Q
    || ||||| ||||||    
T  37264 agctaaagcttagtt 37278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 4831 - 5023
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    |||||||||||||||||||  |||||| |||| |||||||  | || |||| |||| | || ||||||| |  ||  ||||||| |||||||| ||||||    
T  4831 atgcaaaatgatgcatgat--gcttatgcaaagatagacacatgtttttttggaaggatttgtcaaagtaa--ttggaaacattatagaggaatatggtt 4926  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggtt-cttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||||| |||||||  |||||| |  |||| |||||||||||| |||||||||||||||||||||||||| |||||||||  ||||| ||||||    
T  4927 tcatttgaaagttgtaaatatattgcgataggttccttttttcaaaa-gtaagaacgaaaccaaggaaaaagttcttaacaaaacctaaagcttagtt 5023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 31449 - 31262
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcat 133  Q
    ||||||||||||||||||||||| ||||||||||||  ||||  |||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||    
T  31449 aaaatgatgcatgatatgcttatgcaaaaatagacacatttt--ttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttat 31355  T
Q  134 ttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-tttaacaaaagttaaagtttagtt 226  Q
    ||||||||||| ||| | ||||||  |||||  |||||||||| | ||||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  31354 ttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-tgagaacgaaaccaaggaaaaagttctttaacaaaagttgaagcttagtt 31262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 12503 - 12377
Alignment:
Q  71 tttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcattt-gaaaattgtaaaggtattgcaaacggttcttttt 169  Q
    ||||| ||||| ||| |||| ||||||| ||||  ||||||  |||||||||||||||||||||| ||| |||||||||   ||||||||||||| ||||    
T  12503 ttttttttttttaaggacttgtcaaagtgaattg-taaacacagtagaggaacatggtttcattttgaatattgtaaagtcgttgcaaacggttcctttt 12405  T
Q  170 tcaaaaggtaagaacgaaaccaaggaaa 197  Q
    ||||||||||||||||||||||||||||    
T  12404 tcaaaaggtaagaacgaaaccaaggaaa 12377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 99211 - 99004
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||| ||||||||||||| |||||| || |||||||||||| ||||| ||||||||| |||| ||||||| |  || ||||| |    
T  99211 cagacttgaaattatgaatgaaaaatgatgcatgctatgct-atgcaaaaatagacacttttt-tttttgaaggacttgtcaaagtaa--ttgtaaactt 99116  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || |||||||| |||| |||  |||||||| ||| | ||||||  |||||  |||||||||  ||||||||||||||||||||||||| |||||||||    
T  99115 gata-aggaacattgttttattcaaaaattgtgaagatgttgcaattggttcccttttcaaaac-taagaacgaaaccaaggaaaaagttcttaacaaaa 99018  T
Q  213 gttaaagtttagtt 226  Q
    ||||||| ||||||    
T  99017 gttaaagattagtt 99004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 1 - 180
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcat 133  Q
    ||||||||||||| ||||||||| ||||||||||||  |||| ||||| ||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||    
T  1 aaaatgatgcatgctatgcttatgcaaaaatagacacatttt-tttttaaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttat 96  T
Q  134 ttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaa 218  Q
    ||||||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||| ||||    
T  97 ttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaa 180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 25286 - 25473
Alignment:
Q  35 aaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatt 134  Q
    |||||||||||| ||||||||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |  || || ||||| |||| |||    
T  25286 aaatgatgcatgctatgcttatgcaaaaatagacacatttt-tttttgaaggacttgtcaaagtaa--ttgtaaacttgata-agaaacattgttttatt 25381  T
Q  135 tgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagttt-ttaacaaaagttaaagtttagtt 226  Q
    |||||||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  25382 tgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaatttcttaacaaaagctaaagcttagtt 25473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 8582 - 8379
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| |||||||||  |||||||||||  |||| ||||| ||| |||| ||||||| |  || |||||||    
T  8582 cagacttgaaattattaatgcaaaatgatgcatgctatgcttatggaaaaatagacacatttttttttttaaggacttgtcaaagtca--ttgtaaacat 8485  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaa 211  Q
      || |||||||| |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||| ||||||||||| ||||||| | ||||||    
T  8484 aata-aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaatgaaaccaaggataaaagttctcaacaaa 8387  T
Q  212 agttaaag 219  Q
    || |||||    
T  8386 agctaaag 8379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 18210 - 18030
Alignment:
Q  40 atgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaa 139  Q
    ||||||| ||||||||| ||||||||||||  ||||  |||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| ||||||||    
T  18210 atgcatgctatgcttatgcaaaaatagacacatttt--ttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaacattgttttatttgaaa 18116  T
Q  140 attgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||| ||| | ||||||  |||||  |||||||||| |||||||||||||||||||||| || |||||||||| ||||| ||||||    
T  18115 attgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagtt 18030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 7 - 200
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtt 129  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||| ||||||||| |||| |||||||  | || || || |||   ||| |||| |||    
T  7 atgcaaaatgatgcatgatatgcttatgcaaaaatagacacattttttttttgaaggacttgtcaaagt--aattgtagac-ttgataagggacattgtt 103  T
Q  130 tcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    |  ||||||| |||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||| |||||||  ||||||||| ||||| ||||||    
T  104 ttgtttgaaacttgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggataaaagttcataacaaaagctaaagcttagtt 200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 17617 - 17428
Alignment:
Q  34 aaaatgatgcatgatatgcttatacaaaaatagaca-atttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttca 132  Q
    |||||||||||||||||||||||  ||||| || || |||||| ||||||||| |||| ||||||| |  || ||||| |  || |||||||| |||| |    
T  17617 aaaatgatgcatgatatgcttatggaaaaaaaggcacatttttttttttgaaggacttgtcaaagtaa--ttgtaaacttcata-aggaacattgtttta 17521  T
Q  133 tttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    |||||||| ||| ||| | ||||||  |||||  ||| |||||| |||||||||||||||||||||| || |||||||||| ||||| ||||||    
T  17520 tttgaaaaatgtgaagatgttgcaattggttccctttccaaaag-taagaacgaaaccaaggaaaaatttcttaacaaaagctaaagcttagtt 17428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 3832 - 4025
Alignment:
Q  13 cagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacat 112  Q
    |||||| |||| |||  ||||||||||||||||| ||||||||| ||||||||||||  ||||  |||||||| |||| ||||||| |  || ||||| |    
T  3832 cagacttgaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatagacatatttt--ttttgaagcacttgtcaaagtaa--ttgtaaactt 3927  T
Q  113 tgtagaggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaa 212  Q
      || || ||||| |||| ||||||||||||| ||| | ||||||  ||||   |||||||||| ||||||||||||||||||||||||| |||| ||||    
T  3928 gataaag-aacattgttttatttgaaaattgtgaagatgttgcaattggtttccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaaaaaaa 4025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 22844 - 22944
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| |||| |||||||| |||| ||| |||||| |  ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||    
T  22844 aggaacattgttttatttgaaatttgtgaagatattgctattggttcctttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaa 22942  T
Q  218 ag 219  Q
    ||    
T  22943 ag 22944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 192215 - 192389
Alignment:
Q  48 tatgcttatacaaaaatagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggtttcatttgaaaattgtaaa 147  Q
    |||| |||| ||||||||||||  |||| ||||||||| |||| ||||||| |  || ||||| |  || ||||| || |||| ||||||||||||| ||    
T  192215 tatgtttatgcaaaaatagacacattttttttttgaaggacttgtcaaagtaa--ttgtaaacttgata-aggaatattgttttatttgaaaattgtgaa 192311  T
Q  148 ggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    | | ||||||   ||||  |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  192312 gatgttgcaatttgttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagtt 192389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2162 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold2162
Description:

Target: scaffold2162; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 384 - 270
Alignment:
Q  106 taaacattgtagaggaacatggtttcatttgaaaattgtaaaggta-ttgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtt-t 203  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| || || |||  ||||  |||||| |||||||||||||||||||||||| ||||| |    
T  384 taaacatggcagaggaacatggtttcatttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaagaacgaaaccaaggaagaagttct 285  T
Q  204 ttaacaaaagttaaa 218  Q
    |||||| ||| ||||    
T  284 ttaacataagctaaa 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2162; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 506 - 451
Alignment:
Q  12 acagactagaaactatagatgcaaaatgatgcatgatatgcttatacaaaaataga 67  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  506 acagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaataga 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 3983 - 3875
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaa-aagtttttaacaaaagtta 216  Q
    |||||||| |||| ||||||||||||| ||| | ||||||  |||||  ||||||||| ||||||||||||||||||||| ||||| |||||||||| ||    
T  3983 aggaacattgttttatttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggaaagaagttcttaacaaaagcta 3885  T
Q  217 aagtttagtt 226  Q
    ||| ||||||    
T  3884 aagcttagtt 3875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 11773 - 11649
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaa-tagacaatttttatttttgaagaacttatcaaagttaatttataaacattgtagaggaacatggt 128  Q
    |||||| |||||||||||||||||||| |||||| ||||||  |||| ||||  ||| | || ||||||| |  ||  ||||||| ||||||||| ||||    
T  11773 atgcaagatgatgcatgatatgcttatgcaaaaaatagacacattttttttt--aaggatttgtcaaagtaa--ttggaaacattatagaggaacctggt 11678  T
Q  129 ttcatttgaaaattgtaaaggtattgcaa 157  Q
    |||||||||||||||||||| ||||||||    
T  11677 ttcatttgaaaattgtaaagatattgcaa 11649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 14281 - 14320
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagaca 69  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  14281 atgcaaaatgatgcatgatatgcttatgcaaaaatagaca 14320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 10599 - 10541
Alignment:
Q  167 ttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||| ||||| ||||||    
T  10599 ttttcaaaaagtaagaacgaaaccaagg-aaaagttcttaacaaaaggtaaagcttagtt 10541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 19390 - 19479
Alignment:
Q  136 gaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||| ||| | ||||||  |||||  |||||||| ||||||||| |||||||||||||| || |||||||||| ||||| ||||||    
T  19390 gaaaattgtgaagatgttgcaattggttcccttttcaaa-ggtaagaacaaaaccaaggaaaaatttcttaacaaaagctaaagcttagtt 19479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 18494 - 18530
Alignment:
Q  33 caaaatgatgcatgatatgcttatacaaaaatagaca 69  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18494 caaaatgatgcatgttatgcttatgcaaaaatagaca 18530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 30884 - 30824
Alignment:
Q  166 tttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaagtttagtt 226  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||||| ||||| ||||||    
T  30884 tttttcaaaag-taagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagtt 30824  T

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Target: scaffold0782 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0782
Description:

Target: scaffold0782; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 5937 - 5853
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagaca-atttttatttttgaagaacttatcaaagttaatttataaacatt 113  Q
    |||||| |||||||||||||||||||| |||||||||||| |  ||| |||| |||| |||||| |||| || ||| ||||||||    
T  5937 atgcaagatgatgcatgatatgcttatgcaaaaatagacacacattttttttcgaaggacttataaaagctattttgtaaacatt 5853  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 301450 - 301343
Alignment:
Q  118 aggaacatggtttcatttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaaggaaaaagtttttaacaaaagttaa 217  Q
    |||||||| || | ||||||||||||| ||| |  |||||  | |||  |||||||||| |||||  ||||||||||| |||||| ||||||||||||||    
T  301450 aggaacattgtcttatttgaaaattgtgaagatgctgcaattgcttcccttttcaaaag-taagagtgaaaccaaggagaaagttcttaacaaaagttaa 301352  T
Q  218 agtttagtt 226  Q
    || ||||||    
T  301351 agcttagtt 301343  T

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Target: scaffold0243 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 17012 - 16926
Alignment:
Q  132 atttgaaaattgtaaaggtattgcaaacggttcttttttcaaaaggtaagaacgaaaccaagga-aaaagtttttaacaaaagttaaa 218  Q
    ||||||||||||| ||| | ||||||   ||||| ||||||||| ||||||| ||||||||||| ||||||| |||||||||| ||||    
T  17012 atttgaaaattgtgaagatgttgcaatttgttctcttttcaaaa-gtaagaatgaaaccaaggataaaagttcttaacaaaagctaaa 16926  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 184178 - 184217
Alignment:
Q  30 atgcaaaatgatgcatgatatgcttatacaaaaatagaca 69  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  184178 atgcaagatgatgcatgatatgcttatgcaaaaatagaca 184217  T

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Target: scaffold0084 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 33920 - 33979
Alignment:
Q  167 ttttcaaaaggtaagaacgaaaccaaggaaaaagtt-tttaacaaaagttaaagtttagtt 226  Q
    |||||||||| |||||| |||||||||||||||||| ||||||||||| || || ||||||    
T  33920 ttttcaaaag-taagaaggaaaccaaggaaaaagttctttaacaaaagctatagcttagtt 33979  T

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