View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20195_high_3 (Length: 481)
Name: NF20195_high_3
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 39410001 - 39410464
Alignment:
| Q |
1 |
aagatgttgcgagggacggtcatataaaattatagtttctccattaaaagcaatcaaatcgccacgtcggaccaacttgtttttagttagtacaaatttg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39410001 |
aagatgttgcaagggacggtcatataaaattatagtttctccattaaaagcaatcaaatcgccacgtcggaccaacttgtttttagttagtacaaatttg |
39410100 |
T |
|
| Q |
101 |
gaccagtagattctgaccacgtgggatttatgctatttctgtttgagccctctttctcaaggcatatttaaattccacttgttgtaatagcaacactgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39410101 |
gaccagtagattctgaccacgtgggatttatgctatttctgtttgagccctctttctcaaggcatatttaaattccacttgttgtaatagcaacactgat |
39410200 |
T |
|
| Q |
201 |
ataaatgtcagcaaaaccagccatctttaactttaattttccaattgaaaatttgaggtcat-nnnnnnnngagagaagatttttcaatttgctacttgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
39410201 |
ataaatgtcagcaaaaccagccatctttaactttaattttccaattgaaaatttgaggtcataaaaaaaaagagagaatatttttcaatttgctacttgg |
39410300 |
T |
|
| Q |
300 |
tagttcatatattcttcaaaaaacaacacttggctgttgtaaattgtgtaatattaattgtactacgtcacgagaatggaagaacgttatgagattatta |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39410301 |
tagttcatatattcttcaaaaaacaacacttggctgttgtaaattgtgtaatattaattgtactacgtcacgagaatggaagaacgttatgagattatta |
39410400 |
T |
|
| Q |
400 |
aaggtattgggtcaggaaattttggggtagcaaagcttgtaagggagagacaaagtggtaaact |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39410401 |
aaggtattgggtcaggaaattttggggtagcaaagcttgtaagggagagacaaagtggtaaact |
39410464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 37546498 - 37546424
Alignment:
| Q |
137 |
ttctgtttgagccctctttctc----aaggcatatttaaattccacttgttgtaatagcaacactgatataaatgt |
208 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
37546498 |
ttctgattgagccctctttctatatgaaggcat-tttaaattccacttgttgtaataacaacactgatgtaaatgt |
37546424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University