View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20195_high_5 (Length: 356)
Name: NF20195_high_5
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 44 - 341
Target Start/End: Original strand, 32921546 - 32921844
Alignment:
| Q |
44 |
atatactctttaaccatgtattacataacgcatatttagcccatatattatactctttccaatataggtaatatttatcaaagacnnnnnnnn-attggt |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32921546 |
atatactctttaaccatgtattacataacgcatatttagcccatatattatactctttccaatataggtaatatttatcaaagactttttttttattggt |
32921645 |
T |
|
| Q |
143 |
gtgtacgttttttcctacagttccttaattaattataattcaatatcttccatgtaagagtctatttaaccccttcaccactactatctcccttcacaaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32921646 |
gtgtacgttttttcctacagttccttaattaattataattcaatatcttccatgtaagagtctatttaaccccttcaccactactatctcccttcacaaa |
32921745 |
T |
|
| Q |
243 |
ccaccatagcaaaatatcttcttaagggtattcaaaagagaagaatttgcttcctcttgtatcaaacatgcaagtcctaatctcttgtgttttgattct |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32921746 |
tcaccatagcaaaatatcttcttaagggtattcaaaagagaagaatttgcttcctcttgtatcaaacatgcaagtcctaatctcttgtgttttgattct |
32921844 |
T |
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