View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20195_low_10 (Length: 322)
Name: NF20195_low_10
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_low_10 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 8332661 - 8332347
Alignment:
| Q |
11 |
ttattctcacacgtattactctaacaacacaaatattacatgtgatttccaaattatcatgttcaattcaacactattccaaagcatgcttatcaatctg |
110 |
Q |
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| T |
8332661 |
ttattctcacacgtattactctaacaacacaacaattacatgtgatttccaaattatcatgttcaatccaacactattccaaagcatgcttatcaatctg |
8332562 |
T |
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| Q |
111 |
atctgaaatacacatatgctttacacaatatgacaatttaacataataaatattatnnnnnnnnnt---aaaatattggtttcttttcaatcaaactaca |
207 |
Q |
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| T |
8332561 |
atctgaactacacatatgctttacacaatatgacaatttaacataataaatattataaaaaaaaataaaaaaaaatcggtttcttttcaatcaaactaca |
8332462 |
T |
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| Q |
208 |
aaggacaaggagcatacaaacaaaactttacatccagtacgaatatttattgataaaaataaaattacaactccaaactatttactataaatacatcatc |
307 |
Q |
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| T |
8332461 |
aaggacaaggagcatacaaataaaactttacatccagtacgaatatttattaataaaaataaaattacaactccaaactatttactataaatacatcatc |
8332362 |
T |
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| Q |
308 |
aatcattaagcatac |
322 |
Q |
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| T |
8332361 |
aatcattaagcatac |
8332347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 177 - 322
Target Start/End: Original strand, 40770587 - 40770732
Alignment:
| Q |
177 |
aaaatattggtttcttttcaatcaaactacaaaggacaaggagcatacaaacaaaactttacatccagtacgaatatttattgataaaaataaaattaca |
276 |
Q |
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| T |
40770587 |
aaaaaattggtttcttttcaatcaaactacaaaggataaggagcatacaaacaaaactttacatccagtacgaatatttattaataaaaataaaattaca |
40770686 |
T |
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| Q |
277 |
actccaaactatttactataaatacatcatcaatcattaagcatac |
322 |
Q |
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| T |
40770687 |
acttcaaactatttactataaatacatcatcaatcattaagcatac |
40770732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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