View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20195_low_12 (Length: 278)
Name: NF20195_low_12
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_low_12 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 11684602 - 11684879
Alignment:
| Q |
1 |
tgaatcagttagtattgtgtgcagttgattaacagcttctctctgttttttctcgaaaacactgtccttgacatcgagagtggataagagagtaatcaac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684602 |
tgaatcagttagtattgtgttcagttgattaacaacttttctctgttttttttcgaaaacactgtccttgacatcgagagtggataagagagtaatcaac |
11684701 |
T |
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| Q |
101 |
tgccgattcagataacaaggctggaacttactacatgccaaaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaact |
200 |
Q |
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| T |
11684702 |
tgccgattcagataacaaggctggaacttactacatgccaaaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaact |
11684801 |
T |
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| Q |
201 |
tcacagatgaggttggatcaacggccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaat |
278 |
Q |
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| T |
11684802 |
tcaaagatgaggttggatcaacagccacaactcctttgaatccacaataccgaatctgaaaggcagatggcattgaat |
11684879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 11676865 - 11677142
Alignment:
| Q |
1 |
tgaatcagttagtattgtgtgcagttgattaacagcttctctctgttttttctcgaaaacactgtccttgacatcgagagtggataagagagtaatcaac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11676865 |
tgaatcagttagtattgtgttcagttgattaacaacttttctctgttttttttcgaaaacactgtccttgacatcgagagtggataagagagtaatcaac |
11676964 |
T |
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| Q |
101 |
tgccgattcagataacaaggctggaacttactacatgccaaaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaact |
200 |
Q |
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| T |
11676965 |
tgccgattcagataacaaggctggaacttactacatgccaaaacatccaaatctgcgttaactgaatcatacttgcgcatgctcatcctcagtgacaact |
11677064 |
T |
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| Q |
201 |
tcacagatgaggttggatcaacggccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaat |
278 |
Q |
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| T |
11677065 |
tcacagatgaggttggatcaacagccacaactcctttgaatccacgataccgaatctgaaaggcagatggcatagaat |
11677142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 11637944 - 11637667
Alignment:
| Q |
1 |
tgaatcagttagtattgtgtgcagttgattaacagcttctctctgttttttctcgaaaacactgtccttgacatcgagagtggataagagagtaatcaac |
100 |
Q |
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|||||| |||||||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
11637944 |
tgaatctgttagtatcgtgttcagttgagtaacagcttctttttgttttttctcgaaaacactgtccttgacatcaagagtacataagagagtaatcaat |
11637845 |
T |
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| Q |
101 |
tgccgattcagataacaaggctggaacttactacatgccaaaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaact |
200 |
Q |
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| T |
11637844 |
tgtcgattgagataacaaggctgaaacttactacatgccagaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaact |
11637745 |
T |
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| Q |
201 |
tcacagatgaggttggatcaacggccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaat |
278 |
Q |
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| T |
11637744 |
tcacagacgaggttggatcaacagctacgactcctttgtacccgccatacctaatctgaaacgcagatggcactgaat |
11637667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 11629174 - 11628898
Alignment:
| Q |
2 |
gaatcagttagtattgtgtgcagttgattaacagcttctctctgttttttctcgaaaacactgtccttgacatcgagagtggataagagagtaatcaact |
101 |
Q |
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||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
11629174 |
gaatcagttagtattgtgttcagttgatcaacagcttctttttgttttttctcgaaaacactgtcctcgacatcaagagtggataagagagtaatcaact |
11629075 |
T |
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| Q |
102 |
gccgattcagataacaaggctggaacttactacatgccaaaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaactt |
201 |
Q |
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| |||||||||||||||||| | |||||||||||||||||||||||||| | | |||| ||||||||||||||| |||| ||| ||||||||||||| || |
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| T |
11629074 |
gtcgattcagataacaaggccgaaacttactacatgccaaaacatccaaatctgtgttgtctgaatcatacttgagcatgctcatcctcagtgacaattt |
11628975 |
T |
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| Q |
202 |
cacagatgaggttggatcaacggccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaat |
278 |
Q |
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||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||| || ||||| |||| |
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| T |
11628974 |
caccgatgaggttggatcaacagccacaactcctttgtacccaccataccgaatctggaaggcggacggcatagaat |
11628898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 11688769 - 11688891
Alignment:
| Q |
156 |
tgttatctgaatcatacttgtgcatactcttcctcagtgacaacttcacagatgaggttggatcaacggccacaactcctttgaatccaccataccgaat |
255 |
Q |
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| T |
11688769 |
tgttatctgaatcatacttgtgcatactcttcctcagtgacaacttcaaagatgaggttggatcaacagccacaactcctttgaatccaccataccgaat |
11688868 |
T |
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| Q |
256 |
ctgaaaggcagatggcattgaat |
278 |
Q |
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| T |
11688869 |
ctgaaaggcagatggcattgaat |
11688891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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