View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20195_low_5 (Length: 405)
Name: NF20195_low_5
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 24 - 397
Target Start/End: Complemental strand, 50808614 - 50808240
Alignment:
| Q |
24 |
gaagaatttgtgcatgtactacccgcgacaaagtactggatttccaagaggtagttctaaatata--gaggagcggccttttctcagctttggagacttg |
121 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
50808614 |
gaagaatttgtgcatgtactacg-gcgacaaagtactggatttccaagaggtagttctaaatatatagaggagcggctttttctcagctttggagacttg |
50808516 |
T |
|
| Q |
122 |
ggtttgttgtaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttg |
221 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808515 |
ggtttgttgcaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttg |
50808416 |
T |
|
| Q |
222 |
ttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttg |
321 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808415 |
ttggatagatatatgttagtttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttg |
50808316 |
T |
|
| Q |
322 |
ttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgct |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808315 |
ttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgct |
50808240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 24 - 397
Target Start/End: Original strand, 50867249 - 50867623
Alignment:
| Q |
24 |
gaagaatttgtgcatgtactacccgcgacaaagtactggatttccaagaggtagttctaaatat--agaggagcggccttttctcagctttggagacttg |
121 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
50867249 |
gaagaatttgtgcatgtactacg-gcgacaaagtactggatttccaagaggtagttctaaatatatagaggagcggctttttctcagctttggagacttg |
50867347 |
T |
|
| Q |
122 |
ggtttgttgtaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttg |
221 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867348 |
ggtttgttgcaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttg |
50867447 |
T |
|
| Q |
222 |
ttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttg |
321 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867448 |
ttggatagatatatgttagtttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttg |
50867547 |
T |
|
| Q |
322 |
ttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgct |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50867548 |
ttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgct |
50867623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 89 - 397
Target Start/End: Original strand, 19054869 - 19055177
Alignment:
| Q |
89 |
gaggagcggccttttctcagctttggagacttgggtttgttgtaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatga |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19054869 |
gaggagcggctttttctcagctttggagacttgggtttgttgcaagtttctgtaccaggttgagtgacacagtctcaagtgagataggcaaagcatatga |
19054968 |
T |
|
| Q |
189 |
aaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatgg |
288 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19054969 |
aaaaacaacgtgagtagttaagtctttctttttttggatagatatatgttagtttccaaggatcaaaccctgaacttcatacttagaactccatcgatgg |
19055068 |
T |
|
| Q |
289 |
atatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgtta |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055069 |
atatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgtta |
19055168 |
T |
|
| Q |
389 |
gcctttgct |
397 |
Q |
| |
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||||||||| |
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| T |
19055169 |
gcctttgct |
19055177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 19053955 - 19054022
Alignment:
| Q |
24 |
gaagaatttgtgcatgtactacccgcgacaaagtactggatttccaagaggtagttctaaatatagagg |
92 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19053955 |
gaagaatttgtgcatgtactacg-gcgacaaagtactggatttccaagaggaagttctaaatatagagg |
19054022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 31109966 - 31109838
Alignment:
| Q |
89 |
gaggagcggccttttctcagctttggagacttgggtttgttgtaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatga |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
31109966 |
gaggagcggctttttctcagctttggagacttggatttgttgcaagtttctgtaccaagttgagtgacacagtctcaagtgagatcggcaaagcatatgg |
31109867 |
T |
|
| Q |
189 |
aaaaacaacgtgagtagttaactctttct |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
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| T |
31109866 |
aaaaacaacgtgagtagttaaccctttct |
31109838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 31109800 - 31109735
Alignment:
| Q |
222 |
ttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatg |
287 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||| |||||| |
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|
| T |
31109800 |
ttggatagatatatgtcagtttccaaggatcaaaccctgaagttcctacttagaactccttcgatg |
31109735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 6064673 - 6064740
Alignment:
| Q |
24 |
gaagaatttgtgcatgtactacccgcgacaaagtactggatttccaagaggtagttctaaatatagagg |
92 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
6064673 |
gaagaatttgttcatgtactacg-gagacaaagcactggatttccaagaggaagttctaaatatagagg |
6064740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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