View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20195_low_6 (Length: 402)
Name: NF20195_low_6
Description: NF20195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20195_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 31643664 - 31643274
Alignment:
| Q |
1 |
ggaaagaactaaccaaaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcatag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31643664 |
ggaaagaactaaccagaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcttcacttctgcatag |
31643565 |
T |
|
| Q |
101 |
aatagatgagnnnnnnnggttatatagagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgag |
200 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31643564 |
aatagatcagaaaaaaaggttatatagagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagagtgttaatatgag |
31643465 |
T |
|
| Q |
201 |
tgatggagttgaggtgtttgggtttagggatacggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatcaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31643464 |
tgatggagttgaggtgtttgggtttagggatacggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatcaatgt |
31643365 |
T |
|
| Q |
301 |
tcttgaagttggcagcaatggttttcgaggtcccacacgagagtgcttcagttttcccataacagtttgcaaagatagatgaatgaattga |
391 |
Q |
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| T |
31643364 |
tcttgaagttggcagcaatggtttttgaggtcccacacgagagtgcttcaattttcccgtaacagtttgcaaagatagatgaatgaattga |
31643274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 31635690 - 31635297
Alignment:
| Q |
1 |
ggaaagaactaaccaaaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcat-- |
98 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||| |
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| T |
31635690 |
ggaaagaactgaccaaaaaattatgatataaaaatactctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcatcgcgtctgcatgt |
31635591 |
T |
|
| Q |
99 |
--agaatagatgagnnnnnnnggttatatagagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaata |
196 |
Q |
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| T |
31635590 |
gtaaaataaacaagaaagagaggtaataaagagagaaaa-caaagcaaaaagaaagatatgtttgtagttgaattgaagaaaaacctgagattgttaata |
31635492 |
T |
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| Q |
197 |
tgagtgatggagttgaggtgtttgggtttagggatacggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31635491 |
tgagtgatggagttgaggtgtttgggtttagggatacggagagataagagaataagaaaaataatgaggaatatgaaggtgacaaacaaggtaaagatca |
31635392 |
T |
|
| Q |
297 |
atgttcttgaagttggcagcaatggttttcgaggtcccacacgagagtgcttcagttttcccataacagtttgcaaagatagatgaatgaattga |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
31635391 |
atgttcttgaagttggcagcaatggttttcgaggtcccacacgagagtgcttcaattttcccataacagttttcaaagatagatgaatgaattga |
31635297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 31650826 - 31650576
Alignment:
| Q |
12 |
accaaaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcat--------agaat |
103 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
31650826 |
accagaaaattatgatataaaaatgctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgtcttcatttctgcatgcatgcatagaat |
31650727 |
T |
|
| Q |
104 |
agatgagnnnnnnnggttatatagagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgagtga |
203 |
Q |
| |
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| | ||| || || ||||||||||||||| ||||| |||||||| ||||| ||||||| ||||| |||||||||| ||||| ||||||||| |
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| T |
31650726 |
aaacgagaaaaagatgtcgtaaagagagaaaaacaaaacaaaaaggaagatgtgtttgtagttgaatggaagagaaacctgagagtgttactatgagtga |
31650627 |
T |
|
| Q |
204 |
tggagttgaggtgtttgggtttagggatacggagagataagagaataagaa |
254 |
Q |
| |
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||||||| ||||| || |||||||| ||||| |||| ||||| |||||||| |
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| T |
31650626 |
tggagttaaggtgatttggtttaggaatacgaagagttaagataataagaa |
31650576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 31629189 - 31629092
Alignment:
| Q |
7 |
aactaaccaaaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttctgcatagaata |
104 |
Q |
| |
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|||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31629189 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaata |
31629092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 31654290 - 31654059
Alignment:
| Q |
17 |
aaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaatgcttattgtcatcgtcttcacttc-tgcatagaatagatgagnnnnn |
115 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| | || | |||||| |||| || || |
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| T |
31654290 |
aaaattatgatataaaaatgctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgttt---ctgcatgcataaaataaataaggga-- |
31654196 |
T |
|
| Q |
116 |
nnggttatatagagagaaaaacaaagcaaaagggaagatgactttgttgttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggt |
215 |
Q |
| |
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||| | | ||||||| ||||||| ||||| ||||||| | ||||| ||||||| |||| |||||||||| ||||| |||||||||||||||| |||| |
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| T |
31654195 |
--ggtaacaaagagagagaaacaaatcaaaaaggaagataagtttgtagttgaatcaaagagaaacctgagagtgttactatgagtgatggagttaaggt |
31654098 |
T |
|
| Q |
216 |
gtttgggtttagggatacggagagataagagaataagaa |
254 |
Q |
| |
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| || ||||||||||||| |||| ||||| |||||||| |
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| T |
31654097 |
gatttagtttagggatacgaagagttaagataataagaa |
31654059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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