View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20196_high_2 (Length: 675)

Name: NF20196_high_2
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20196_high_2
NF20196_high_2
[»] chr4 (2 HSPs)
chr4 (1-499)||(32905681-32906179)
chr4 (562-667)||(32905513-32905620)
[»] chr2 (1 HSPs)
chr2 (1-95)||(8793859-8793954)
[»] chr5 (4 HSPs)
chr5 (5-62)||(14156996-14157053)
chr5 (1-58)||(33085327-33085384)
chr5 (5-58)||(35626642-35626695)
chr5 (4-36)||(5741782-5741814)
[»] chr8 (1 HSPs)
chr8 (5-62)||(20164429-20164486)
[»] chr7 (3 HSPs)
chr7 (5-62)||(44377266-44377323)
chr7 (5-62)||(44386133-44386190)
chr7 (5-61)||(47357224-47357279)
[»] chr3 (1 HSPs)
chr3 (6-58)||(51312896-51312948)
[»] chr1 (1 HSPs)
chr1 (1-53)||(44018581-44018633)


Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 32906179 - 32905681
Alignment:
Q  1 ttgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattcattaccaaagccctcagggcaccggttaacaagacccttaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32906179 ttgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattcattaccaaagtcctcagggcaccggttaacaagacccttaag 32906080  T
Q  101 aaaataaagctttgcttaccgagatggtgattgaaggggaggagatggttgcaatgggtgcaaatacaataaggttggactattgaggtgatttttgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32906079 aaaataaagctttgcttaccgagatggtgattgaaggggaggagatggttgcaatgggtgcaaatacaataaggttggactattgaggtgatttttgaag 32905980  T
Q  201 gtgcatgggaattatggttggaatttggagtggcagagagaaagctacagaatgaatcagacatgatgggaaggatgattagaatcagcttattatcttc 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32905979 gtgcatgggaattatggttggaatttgaagtggcagagagaaagctacagaatgaatcagacatgatgggaaggatgattagaatcagcttattatcttc 32905880  T
Q  301 tacaaaacacaaggtttttattgtatactatttcacattggaaaactaaggataatctctgcaaattttcactgtttgaaaatagggttttaattagttt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  32905879 tacaaaacacaaggtttttattgtatactatttcacattggaaaactaaggataatctctgcaaattttcactgtttgaaaataggattttaaatagttt 32905780  T
Q  401 gagtgaagatagaatgagaaggaagctgaagaagagacagtgtatttataagaagtaaagaacgttgtagtaaaagctagcactaggtggagcaacaag 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32905779 gagtgaagatagaatgagaaggaagctgaagaagagacagtgtatttataagaagtaaagaacgttgtagtaaaagctagcattaggtggagcaacaag 32905681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 562 - 667
Target Start/End: Complemental strand, 32905620 - 32905513
Alignment:
Q  562 gagagagttaaggtgtttctttaaaaggacaacagtcacagcatgatgtt--tgtcatgtgttattaaagtttgcttcttccccatatgtctccagctct 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32905620 gagagagttaaggtgtttctttaaaaggacaacagtcacagcatgatgttgttgtcatgtgttattaaagtttgcttcttccccatatgtctccagctct 32905521  T
Q  660 ctgctcct 667  Q
     |||||||    
T  32905520 ttgctcct 32905513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8793859 - 8793954
Alignment:
Q  1 ttgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatt-accaaagccctcagggcaccggttaacaagaccc 95  Q
    |||| ||||||||||||||||||||||||| ||||| ||| |||| |||| | ||||| || ||||| ||||| ||||||| ||||| ||||||||    
T  8793859 ttgccaagacaaaaataaaaacttatatttccaagacaaagtttctattagtagattccttaaccaatgcccttagggcactggttagcaagaccc 8793954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 14157053 - 14156996
Alignment:
Q  5 taagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatta 62  Q
    |||||||||| |||||| || ||||||||||||||| |||| ||||| ||||||||||    
T  14157053 taagacaaaagtaaaaatttgtatttacaagataaaatttctattaaaggattcatta 14156996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33085327 - 33085384
Alignment:
Q  1 ttgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattc 58  Q
    |||||||||||||| |||||| |||||||| ||||| ||| |||| | ||||||||||    
T  33085327 ttgctaagacaaaagtaaaaatttatattttcaagacaaagtttctactaatggattc 33085384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 35626642 - 35626695
Alignment:
Q  5 taagacaaaaataaaaacttatatttacaagataaactttccattaatggattc 58  Q
    |||||||||| ||||||||||||||| ||| | ||| |||| ||||||||||||    
T  35626642 taagacaaaagtaaaaacttatattttcaaaacaaaatttctattaatggattc 35626695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 5741814 - 5741782
Alignment:
Q  4 ctaagacaaaaataaaaacttatatttacaaga 36  Q
    ||||||||||||||||| |||||||||||||||    
T  5741814 ctaagacaaaaataaaagcttatatttacaaga 5741782  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 20164486 - 20164429
Alignment:
Q  5 taagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatta 62  Q
    ||||||||||||||||||||||||||  |||| |||  ||  ||||||||||||||||    
T  20164486 taagacaaaaataaaaacttatatttttaagacaaaacttttattaatggattcatta 20164429  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 44377323 - 44377266
Alignment:
Q  5 taagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatta 62  Q
    ||||||||||||||||||||||||||  |||| |||  ||  ||||||||||||||||    
T  44377323 taagacaaaaataaaaacttatatttttaagacaaaacttttattaatggattcatta 44377266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 44386190 - 44386133
Alignment:
Q  5 taagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatta 62  Q
    ||||||||||||||||||||||||||  |||| |||  ||  ||||||||||||||||    
T  44386190 taagacaaaaataaaaacttatatttttaagacaaaacttttattaatggattcatta 44386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 47357224 - 47357279
Alignment:
Q  5 taagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatt 61  Q
    ||||| ||||||||||||||||||||| |||||||| |||| |||||  ||||||||    
T  47357224 taagataaaaataaaaacttatattta-aagataaaatttctattaagagattcatt 47357279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 51312948 - 51312896
Alignment:
Q  6 aagacaaaaataaaaacttatatttacaagataaactttccattaatggattc 58  Q
    ||||||||||||||| ||||||||| ||||||||| |||  |||| |||||||    
T  51312948 aagacaaaaataaaagcttatattttcaagataaaatttatattagtggattc 51312896  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44018633 - 44018581
Alignment:
Q  1 ttgctaagacaaaaataaaaacttatatttacaagataaactttccattaatg 53  Q
    ||||||| ||||||||||||| ||||||||  |||||||| |||| |||||||    
T  44018633 ttgctaaaacaaaaataaaaatttatatttttaagataaagtttctattaatg 44018581  T

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