View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20196_high_3 (Length: 589)
Name: NF20196_high_3
Description: NF20196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20196_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 3 - 574
Target Start/End: Complemental strand, 29033410 - 29032854
Alignment:
| Q |
3 |
caaaggcataaaagtacccaaaatttggtcctctaagttaacaagcttatctaaacttaaaacattaatatagattaattaagttagacattttgcaact |
102 |
Q |
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| T |
29033410 |
caaaggcataaaagtacctaaaatttggtcctctaagttaactagcttatctaaacttaaaacattaatatagattaattaagttagacattttgcaact |
29033311 |
T |
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| Q |
103 |
taactgcaaaaagaactacaaagttcaggatagtaaaaaacgtcttccataatagagcattctcctacaggatgggtttccatttccccaaaaaacatac |
202 |
Q |
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| T |
29033310 |
tagctgcaaaaagaactacaaa---------------aaacgtcttccatgatagagcattctcctacatgatggttttccatttccccaaaaaacatac |
29033226 |
T |
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| Q |
203 |
cctcatttgtgttaataaagttaaacccattgttaatggtttcaaattgttgcatgggaaaaccttgttgatcaaaagagacagttccaaaagtaccctc |
302 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29033225 |
cctcattagtgttaataaagttaaacccattgttaatggtttcaaattgttgcatgggaaaaccttgttgatcaaaagagacagttccaaaagtaccctc |
29033126 |
T |
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| Q |
303 |
caacataggaaccatgttatgagatattggctgagaaattgaaccaagactatttgttttcgccttcttctcattatttgtagtttttgaacttttcata |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29033125 |
caacataggaaccatgttatgagatattggctgagaaattgaaccaaaactatttgttttcaccttcttctcattatttgtagtttttgaacttttcata |
29033026 |
T |
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| Q |
403 |
aacttgtaaactatctcttccaacaaaccagaagattcccttggaaaaaattccgagtcttcatcaataatttcttcagtaatattaacgttggaggagc |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29033025 |
aacttgtaaactatctcttccaacaaaccagaagattcccttggaaaaaattccgagtcttcatcaataatttcttcagtaatattaacgttggaggagc |
29032926 |
T |
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| Q |
503 |
tagaggaagaaatagtgttattaggcttgttttgaacaaaaggtggaaccacgcaagggttagggtttgaac |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29032925 |
tagaggaagaaatagtgttattaggcttgttttgaacaaaaggtggaaccaaacaagggttagggtttgaac |
29032854 |
T |
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